Ar-matrix IR spectra of 5-halouracils interpreted by means of DFT calculations

被引:42
作者
Dobrowolski, JC
Rode, JE
Kolos, R
Jamróz, MH
Bajdor, K
Mazurek, AP
机构
[1] Ind Chem Res Inst, PL-01793 Warsaw, Poland
[2] Natl Inst Publ Hlth, PL-00725 Warsaw, Poland
[3] Polish Acad Sci, Inst Phys Chem, PL-01224 Warsaw, Poland
关键词
D O I
10.1021/jp045213f
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The infrared low-temperature Ar-matrix spectra of 5-halouracils and unsubstituted uracil were measured and interpreted in terms of the spectra calculated at the DFT/B3PW91/6-311G** level followed by a potential energy distribution (PED) analysis. For the PED analysis, the sets of halouracil mode definitions were constructed so that dissimilarities in the interpretations of the different spectra were minimized. Anharmonic frequency calculations enabled more light to be shed on the Fermi resonance (FR) phenomena occurring in the v(C=O) stretching vibrations region. For each halouracil vibrational spectrum, several FRs manifest themselves in the v(C=O) stretching vibrations region. We show that the most frequent components participating in these resonances are the v(C-4=O-10) frequency, a beta(N-H) mode frequency, and a beta(C=O) mode frequency. The experimental v(N-H) frequencies are reproduced by the calculated anharmonic frequencies better than by the scaled harmonic ones, and the v(C=O) frequencies respond in the opposite manner. The experimental frequencies located below 1500 cm(-1) are reproduced equally well by the two kinds of calculations.
引用
收藏
页码:2167 / 2182
页数:16
相关论文
共 65 条
[1]   Neutron inelastic scattering, optical spectroscopies and scaled quantum mechanical force fields for analyzing the vibrational dynamics of pyrimidine nucleic acid bases .1. Uracil [J].
Aamouche, A ;
Ghomi, M ;
Coulombeau, C ;
Jobic, H ;
Grajcar, L ;
Baron, MH ;
Baumruk, V ;
Turpin, PY ;
Henriet, C ;
Berthier, G .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (13) :5224-5234
[2]   Sensitizing DNA to secondary electron damage: Resonant formation of oxidative radicals from 5-halouracils [J].
Abdoul-Carime, H ;
Huels, MA ;
Illenberger, E ;
Sanche, L .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (22) :5354-5355
[3]  
Alcolea M., 2000, INT J QUANTUM CHEM, V77, P661
[4]   STRUCTURAL AND THERMAL STUDIES OF A 5-FLUOROURACIL COMPLEX OF COPPER [J].
ALLAN, JR ;
MCCLOY, B .
THERMOCHIMICA ACTA, 1992, 208 :133-137
[5]   Intensive concurrent chemoradiotherapy for head and neck cancer with 5-fluorouracil- and hydroxyurea-based regimens: Reversing a pattern of failure [J].
Argiris, A ;
Haraf, DJ ;
Kies, MS ;
Vokes, EE .
ONCOLOGIST, 2003, 8 (04) :350-360
[6]   NUCLEIC-ACID BASES STUDIED BY MATRIX-ISOLATION VIBRATIONAL SPECTROSCOPY - URACIL AND DEUTERATED URACILS [J].
BARNES, AJ ;
STUCKEY, MA ;
LEGALL, L .
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 1984, 40 (05) :419-431
[7]   Vibrational zero-point energies and thermodynamic functions beyond the harmonic approximation [J].
Barone, V .
JOURNAL OF CHEMICAL PHYSICS, 2004, 120 (07) :3059-3065
[8]   FROM CONCEPTS TO ALGORITHMS FOR THE TREATMENT OF LARGE-AMPLITUDE INTERNAL MOTIONS AND UNIMOLECULAR REACTIONS [J].
BARONE, V ;
MINICHINO, C .
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 1995, 330 :365-376
[9]   Theoretical and experimental 1H, 13C, 15N, and 17O NMR chemical shifts for 5-halogenouracils [J].
Bednarek, E ;
Dobrowolski, JC ;
Dobrosz-Teperek, K ;
Kozerski, L ;
Lewandowski, W ;
Mazurek, AP .
JOURNAL OF MOLECULAR STRUCTURE, 2000, 554 (2-3) :233-243
[10]   Theoretical and experimental 1H, 13C, 15N, and 17O NMR spectra of 5-nitro, 5-amino, and 5-carboxy uracils [J].
Bednarek, E ;
Dobrowolski, JC ;
Dobrosz-Teperek, K ;
Sitkowski, J ;
Kozerski, L ;
Lewandowski, W ;
Mazurek, AP .
JOURNAL OF MOLECULAR STRUCTURE, 1999, 482 :333-337