The use of non-uniform deuterium labelling ['NMR-window'] to study the NMR structure of a 21mer RNA hairpin

被引:35
作者
Foldesi, A [1 ]
Yamakage, SI [1 ]
Nilsson, FPR [1 ]
Maltseva, TV [1 ]
Chattopadhyaya, J [1 ]
机构
[1] UNIV UPPSALA,CTR BIOMED,DEPT BIOORGAN CHEM,S-75123 UPPSALA,SWEDEN
基金
瑞典研究理事会;
关键词
D O I
10.1093/nar/24.7.1187
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The first synthesis of a non-uniformly deuterium labelled 21 mer RNA is reported using our 'NMR-window' concept, showing its unique application in the unambiguous NMR assignment of the nonexchangeable aromatic and sugar protons.
引用
收藏
页码:1187 / 1194
页数:8
相关论文
共 33 条
[1]  
Aboul-Ela Fareed, 1995, Current Opinion in Biotechnology, V6, P89, DOI 10.1016/0958-1669(95)80014-X
[2]   THE DIFFERENCES IN THE T-2 RELAXATION RATES OF THE PROTONS IN THE PARTIALLY-DEUTERIATED AND FULLY PROTONATED SUGAR RESIDUES IN A LARGE OLIGO-DNA (NMR-WINDOW) GIVES COMPLEMENTARY STRUCTURAL INFORMATION [J].
AGBACK, P ;
MALTSEVA, TV ;
YAMAKAGE, SI ;
NILSON, FPR ;
FOLDESI, A ;
CHATTOPADHYAYA, J .
NUCLEIC ACIDS RESEARCH, 1994, 22 (08) :1404-1412
[3]   STRUCTURE OF THE P1 HELIX FROM GROUP-I SELF-SPLICING INTRONS [J].
ALLAIN, FHT ;
VARANI, G .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 250 (03) :333-353
[4]   DEOXYNUCLEOSIDE PHOSPHORAMIDITES - A NEW CLASS OF KEY INTERMEDIATES FOR DEOXYPOLYNUCLEOTIDE SYNTHESIS [J].
BEAUCAGE, SL ;
CARUTHERS, MH .
TETRAHEDRON LETTERS, 1981, 22 (20) :1859-1862
[5]   SELECTION OF COHERENCE-TRANSFER PATHWAYS IN NMR PULSE EXPERIMENTS [J].
BODENHAUSEN, G ;
KOGLER, H ;
ERNST, RR .
JOURNAL OF MAGNETIC RESONANCE, 1984, 58 (03) :370-388
[6]   HETERONUCLEAR TECHNIQUES IN NMR-STUDIES OF RNA AND DNA [J].
DIECKMANN, T ;
FEIGON, J .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1994, 4 (05) :745-749
[7]   PARTIALLY-DEUTERATED NUCLEOTIDE RESIDUES IN LARGE DNA DUPLEX SIMPLIFY THE SPECTRAL OVERLAP AND PROVIDE BOTH THE J-COUPLING AND NOE INFORMATIONS BY THE NMR-WINDOW APPROACH [J].
FOLDESI, A ;
YAMAKAGE, SI ;
MALTSEVA, TV ;
NILSON, FP ;
AGBACK, P ;
CHATTOPADHYAYA, J .
TETRAHEDRON, 1995, 51 (36) :10065-10092
[8]   SYNTHESIS OF 1'NUMBER,2',3',4'NUMBER,5',5''-(H-2)6-BETA-D-RIBONUCLEOSIDES AND 1'NUMBER,2',2'',3',4'NUMBER,5',5''-(H-2)7-BETA-D-2'-DEOXYRIBONUCLEOSIDES FOR SELECTIVE SUPPRESSION OF PROTON RESONANCES IN PARTIALLY-DEUTERATED OLIGO-DNA, OLIGO-RNA AND IN 2,5A CORE (H-1-NMR WINDOW) [J].
FOLDESI, A ;
NILSON, FPR ;
GLEMAREC, C ;
GIOELI, C ;
CHATTOPADHYAYA, J .
TETRAHEDRON, 1992, 48 (41) :9033-9072
[9]   NMR SPECTROSCOPIC PROPERTIES (H-1 AT 500 MHZ) OF DEUTERATED-ASTERISK RIBONUCLEOTIDE-DIMERS APU-ASTERISK, GPC-ASTERISK, PARTIALLY DEUTERATED 2'-DEOXYRIBONUCLEOTIDE-DIMERS D(TPA-ASTERISK), D(APT-ASTERISK), D(GPC-ASTERISK) AND THEIR COMPARISON WITH NATURAL COUNTERPARTS (H-1-NMR WINDOW) [J].
FOLDESI, A ;
NILSON, FPR ;
GLEMAREC, C ;
GIOELI, C ;
CHATTOPADHYAYA, J .
JOURNAL OF BIOCHEMICAL AND BIOPHYSICAL METHODS, 1993, 26 (01) :1-26
[10]   CHEMICAL SYNTHESIS OF A BIOLOGICALLY-ACTIVE NATURAL TRANSFER-RNA WITH ITS MINOR BASES [J].
GASPARUTTO, D ;
LIVACHE, T ;
BAZIN, H ;
DUPLAA, AM ;
GUY, A ;
KHORLIN, A ;
MOLKO, D ;
ROGET, A ;
TEOULE, R .
NUCLEIC ACIDS RESEARCH, 1992, 20 (19) :5159-5166