Statistical potentials and scoring functions applied to protein-ligand binding

被引:136
作者
Gohlke, H [1 ]
Klebe, G [1 ]
机构
[1] Univ Marburg, Dept Pharmaceut Chem, D-35032 Marburg, Germany
关键词
D O I
10.1016/S0959-440X(00)00195-0
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In virtual screening, small-molecule ligands are docked into protein binding sites and their binding affinity is predicted. Knowledge-based, regression-based and first-principle-based methods have been developed to rank computer-generated binding modes. As a result of stilt existing deficiencies, a best compromise might be the combination of several scoring schemes into a consensus scaring approach.
引用
收藏
页码:231 / 235
页数:5
相关论文
共 61 条
[41]   A knowledge-based scoring function for protein-ligand interactions: Probing the reference state [J].
Muegge, I .
PERSPECTIVES IN DRUG DISCOVERY AND DESIGN, 2000, 20 (01) :99-114
[42]  
MUEGGE I, 2001, IN PRESS J COMPUT CH
[43]   Noncovalent interactions:: A challenge for experiment and theory [J].
Müller-Dethlefs, K ;
Hobza, P .
CHEMICAL REVIEWS, 2000, 100 (01) :143-167
[44]  
Murcko MA, 1999, ANNU REP MED CHEM, V34, P297
[45]   Empirical scoring functions. II. The testing of an empirical scoring function for the prediction of ligand-receptor binding affinities and the use of Bayesian regression to improve the quality of the model [J].
Murray, CW ;
Auton, TR ;
Eldridge, MD .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 1998, 12 (05) :503-519
[46]  
OPREA TI, 1998, 3D QSAR DRUG DESIGN, P3
[47]   EMPIRICAL SCALE OF SIDE-CHAIN CONFORMATIONAL ENTROPY IN PROTEIN-FOLDING [J].
PICKETT, SD ;
STERNBERG, MJE .
JOURNAL OF MOLECULAR BIOLOGY, 1993, 231 (03) :825-839
[48]  
Polticelli F, 1999, PROTEIN SCI, V8, P2621
[49]  
REDDY MR, 1998, 3D QSAR DRUG DESIGN, P85
[50]   Predicting binding affinities of protein ligands from three-dimensional models: Application to peptide binding to class I major histocompatibility proteins [J].
Rognan, D ;
Lauemoller, SL ;
Holm, A ;
Buus, S ;
Tschinke, V .
JOURNAL OF MEDICINAL CHEMISTRY, 1999, 42 (22) :4650-4658