PanSNPdb: The Pan-Asian SNP Genotyping Database

被引：37

作者：

Ngamphiw, Chumpol ^{[1
,2
]}

Assawamakin, Anunchai ^{[1
]}

Xu, Shuhua ^{[3
]}

Shaw, Philip J. ^{[1
]}

Yang, Jin Ok ^{[4
]}

Ghang, Ho ^{[5
]}

Bhak, Jong ^{[5
,6
]}

Liu, Edison ^{[7
]}

Tongsima, Sissades ^{[1
]}

机构：

[1] Natl Ctr Genet Engn & Biotechnol BIOTEC, Klongluang, Pathumthani, Thailand

[2] Chulalongkorn Univ, Fac Grad Sch, Interdept Program BioMed Sci, Bangkok, Thailand

[3] Chinese Acad Sci, Shanghai Inst Biol Sci, CAS MPG Partner Inst Computat Biol, Shanghai, Peoples R China

[4] KRIBB, KOBIC, Taejon, South Korea

[5] Genome Res Fdn, Personal Genom Inst, Suwon, South Korea

[6] TheragenEtex, Theragen BiO Inst, Suwon, South Korea

[7] Genome Inst Singapore, Singapore, Singapore

来源：

PLOS ONE | 2011年 / 6卷 / 06期

基金：

美国国家科学基金会;

关键词：

COPY-NUMBER; GENOME-WIDE; GENETIC DIVERSITY; HAPLOTYPE; POPULATION; BLOCK; MODEL; MAP;

D O I：

10.1371/journal.pone.0021451

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

The HUGO Pan-Asian SNP consortium conducted the largest survey to date of human genetic diversity among Asians by sampling 1,719 unrelated individuals among 71 populations from China, India, Indonesia, Japan, Malaysia, the Philippines, Singapore, South Korea, Taiwan, and Thailand. We have constructed a database (PanSNPdb), which contains these data and various new analyses of them. PanSNPdb is a research resource in the analysis of the population structure of Asian peoples, including linkage disequilibrium patterns, haplotype distributions, and copy number variations. Furthermore, PanSNPdb provides an interactive comparison with other SNP and CNV databases, including HapMap3, JSNP, dbSNP and DGV and thus provides a comprehensive resource of human genetic diversity. The information is accessible via a widely accepted graphical interface used in many genetic variation databases. Unrestricted access to PanSNPdb and any associated files is available at: http://www4a.biotec.or.th/PASNP.

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