Activation process of [NiFe] hydrogenase elucidated by high-resolution X-ray analyses: Conversion of the ready to the unready state

被引:204
作者
Ogata, H
Hirota, S
Nakahara, A
Komori, H
Shibata, N
Kato, T
Kano, K
Higuchi, Y
机构
[1] Kyoto Prefectural Univ, Dept Chem Phys, Century COE Program 21st, Yamashima Ku, Kyoto 6078414, Japan
[2] Max Planck Inst Bioanorgan Chem, D-45470 Mulheim An Der Ruhr, Germany
[3] JST, PRESTO, Kwaguchi, Saitama 3320012, Japan
[4] Josai Univ, Dept Chem, Sakado, Saitama 3500295, Japan
[5] Kyoto Univ, Grad Sch Agr, Div Appl Life Sci, Kyoto 6068502, Japan
基金
日本学术振兴会; 日本科学技术振兴机构;
关键词
D O I
10.1016/j.str.2005.07.018
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Hydrogenases catalyze oxidoreduction of molecular hydrogen and have potential applications for utilizing dihydrogen as an energy source. [NiFe] hydrogenase has two different oxidized states, Ni-A (unready, exhibits a lag phase in reductive activation) and Ni-B (ready). We have succeeded in converting Ni-B to Ni-A with the use of Na2S and O-2 and determining the high-resolution crystal structures of both states. Ni-B possesses a monatomic nonprotein bridging ligand at the Ni-Fe active site, whereas Ni-A has a diatomic: species. The terminal atom of the bridging species of Ni-A occupies a similar position as C of the exogenous CO in the CO complex (inhibited state). The common features of the enzyme structures at the unready (Ni-A) and inhibited (CO complex) states are proposed. These findings provide useful information on the design of new systems of biomimetic dihydrogen production and fuel cell devices.
引用
收藏
页码:1635 / 1642
页数:8
相关论文
共 37 条
[1]   MAGNETIC INTERACTION OF NICKEL(III) AND THE IRON-SULFUR CLUSTER IN HYDROGENASE FROM CHROMATIUM-VINOSUM [J].
ALBRACHT, SPJ ;
KALKMAN, ML ;
SLATER, EC .
BIOCHIMICA ET BIOPHYSICA ACTA, 1983, 724 (03) :309-316
[2]   Hydrogenases: active site puzzles and progress [J].
Armstrong, FA .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2004, 8 (02) :133-140
[3]   The [NiFe] hydrogenase from Allochromatium vinosum studied in EPR-detectable states:: H/D exchange experiments that yield new information about the structure of the active site [J].
Bleijlevens, B ;
Faber, BW ;
Albracht, SPJ .
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2001, 6 (08) :763-769
[4]   FREE R-VALUE - A NOVEL STATISTICAL QUANTITY FOR ASSESSING THE ACCURACY OF CRYSTAL-STRUCTURES [J].
BRUNGER, AT .
NATURE, 1992, 355 (6359) :472-475
[5]  
Brunger AT, 1998, ACTA CRYSTALLOGR D, V54, P905, DOI 10.1107/s0907444998003254
[6]   NICKEL AND IRON-SULFUR CENTERS IN DESULFOVIBRIO-GIGAS HYDROGENASE - ELECTRON-SPIN-RESONANCE SPECTRA, REDOX PROPERTIES AND INTERACTIONS [J].
CAMMACK, R ;
PATIL, DS ;
HATCHIKIAN, EC ;
FERNANDEZ, VM .
BIOCHIMICA ET BIOPHYSICA ACTA, 1987, 912 (01) :98-109
[7]   17O ENDOR detection of a solvent-derived Ni-(OHx)-Fe bridge that is lost upon activation of the hydrogenase from Desulfovibrio gigas [J].
Carepo, M ;
Tierney, DL ;
Brondino, CD ;
Yang, TC ;
Pamplona, A ;
Telser, J ;
Moura, I ;
Moura, JJG ;
Hoffman, BM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (02) :281-286
[8]  
*CCP4, 1994, ACTA CRYSTALLOGR D, V50, P795
[9]   MOLECULAR-STRUCTURES OF THE BIMETALLIC SULFIDE CLUSTERS CP'2MO2CO2S4(CO)(2), CP'2MO2CO2S3(MU(3)-PPH)(CO)(2), CP'3MO3COS4(CO), AND CP'3MO3FES4(SH) [J].
CURTIS, MD ;
RIAZ, U ;
CURNOW, OJ ;
KAMPF, JW ;
RHEINGOLD, AL ;
HAGGERTY, BS .
ORGANOMETALLICS, 1995, 14 (11) :5337-5343
[10]   The bio-organometallic chemistry of active site iron in hydrogenases [J].
Darensbourg, MY ;
Lyon, EJ ;
Smee, JJ .
COORDINATION CHEMISTRY REVIEWS, 2000, 206 :533-561