Computational study on the difference between the Co-C bond dissociation energy in methylcobalamin and adenosylcobalamin

被引:43
作者
Dölker, N
Morreale, A
Maseras, F
机构
[1] Univ Autonoma Barcelona, Unitat Quim Fis, Bellaterra 08193, Catalonia, Spain
[2] Inst Recerca Biomed, Modeling & Bioinformat Unit, Barcelona 08028, Spain
[3] Inst Chem Res Catalonia ICIQ, Tarragona 43007, Catalonia, Spain
来源
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY | 2005年 / 10卷 / 05期
关键词
cofactor; computational chemistry; density functional theory; molecular modeling;
D O I
10.1007/s00775-005-0662-4
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The bond dissociation energies of the Co-C bonds in the cobalamin cofactors methylcobalamin and adenosylcobalamin were calculated using the hybrid quantum mechanics/molecular mechanics method IM-OMM (integrated molecular orbital and molecular mechanics). Calculations were performed on models of differing complexities as well as on the full systems. We investigated the origin of the different experimental values for the Co-C bond dissociation energies in methylcobalamin and adenosylcobalamin, and have provided an explanation for the difficulties encountered when we attempt to reproduce this difference in quantum chemistry. Additional calculations have been performed using the Micrtus-Scrocco-Tomasi method in order to estimate the influence of solvent effects on the homolytic Co-C bond cleavage. Introduction of these solvation effects is shown to be necessary for the correct reproduction of experimental trends in bond dissociation energies in solution, which consequently have no direct correlation with dissociation processes in the enzyme.
引用
收藏
页码:509 / 517
页数:9
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