Environmental application of array technology: promise, problems and practicalities

被引:34
作者
Cook, KL [1 ]
Sayler, GS [1 ]
机构
[1] Univ Tennessee, Dept Microbiol, Ctr Environm Biotechnol, Knoxville, TN 37996 USA
关键词
D O I
10.1016/S0958-1669(03)00057-0
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Array technology has been applied in environmental research using innovative approaches in gene expression, comparative genomics and mixed community analysis. Greater fundamental understanding of sources of experimental and analytical error in array experiments should facilitate the future application of array technology to environmental analysis.
引用
收藏
页码:311 / 318
页数:8
相关论文
共 64 条
[51]  
Steel A, 2000, MICROARRAY BIOCHIP TECHNOLOGY, P87
[52]   Screening unlabeled DNA targets with randomly ordered fiber-optic gene arrays [J].
Steemers, FJ ;
Ferguson, JA ;
Walt, DR .
NATURE BIOTECHNOLOGY, 2000, 18 (01) :91-94
[53]   Functional genomics:: Expression analysis of Escherichia coli growing on minimal and rich media [J].
Tao, H ;
Bausch, C ;
Richmond, C ;
Blattner, FR ;
Conway, T .
JOURNAL OF BACTERIOLOGY, 1999, 181 (20) :6425-6440
[54]   Single-base-pair discrimination of terminal mismatches by using oligonucleotide microarrays and neural network analyses [J].
Urakawa, H ;
Noble, PA ;
El Fantroussi, S ;
Kelly, JJ ;
Stahl, DA .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2002, 68 (01) :235-244
[55]   Analysis of bacterial community composition by oligonucleotide fingerprinting of rRNA genes [J].
Valinsky, L ;
Della Vedova, G ;
Scupham, AJ ;
Alvey, S ;
Figueroa, A ;
Yin, B ;
Hartin, J ;
Chrobak, M ;
Crowley, DE ;
Jiang, T ;
Borneman, J .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2002, 68 (07) :3243-3250
[56]   LuxArray, a high-density, genomewide transcription analysis of Escherichia coli using bioluminescent reporter strains [J].
Van Dyk, TK ;
DeRose, EJ ;
Gonye, GE .
JOURNAL OF BACTERIOLOGY, 2001, 183 (19) :5496-5505
[57]  
Warrington JA, 2000, MICROARRAY BIOCHIP TECHNOLOGY, P119
[58]   Toward a universal standard: Comparing two methods for standardizing spotted microarray data [J].
Weil, MR ;
Macatee, T ;
Garner, HR .
BIOTECHNIQUES, 2002, 32 (06) :1310-1314
[59]   Gene expression in Pseudomonas aeruginosa biofilms [J].
Whiteley, M ;
Bangera, MG ;
Bumgarner, RE ;
Parsek, MR ;
Teitzel, GM ;
Lory, S ;
Greenberg, EP .
NATURE, 2001, 413 (6858) :860-864
[60]   Sequence-specific identification of 18 pathogenic microorganisms using microarray technology [J].
Wilson, WJ ;
Strout, CL ;
DeSantis, TZ ;
Stilwell, JL ;
Carrano, AV ;
Andersen, GL .
MOLECULAR AND CELLULAR PROBES, 2002, 16 (02) :119-127