Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography

被引:159
作者
Han, GW
Lee, JY
Song, HK
Chang, CS
Min, K
Moon, J
Shin, DH
Kopka, ML
Sawaya, MR
Yuan, HS
Kim, TD
Choe, J
Lim, D
Moon, HJ
Suh, SW [1 ]
机构
[1] Seoul Natl Univ, Coll Nat Sci, Sch Chem & Mol Engn, Seoul 151742, South Korea
[2] Univ Calif Los Angeles, Inst Mol Biol, Los Angeles, CA 90095 USA
[3] Acad Sinica, Inst Mol Biol, Taipei 11529, Taiwan
关键词
non-specific lipid-transfer protein; fatty acid binding; hydrophobic cavity; antifungal activity; structural plasticity;
D O I
10.1006/jmbi.2001.4559
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Non-specific lipid-transfer proteins (nsLTPs) are involved in the movement of phospholipids, glycolipids, fatty acids, and steroids between membranes. Several structures of plant nsLTPs have been determined both by X-ray crystallography and nuclear magnetic resonance. However, the detailed structural basis of the non-specific binding of hydrophobic ligands by nsLTPs is still poorly understood. In order to gain a better understanding of the structural basis of the non-specific binding of hydrophobic ligands by nsLTPs and to investigate the plasticity of the fatty acid binding cavity in nsLTPs, seven high-resolution (between 1.3 Angstrom and 1.9 Angstrom) crystal structures have been determined. These depict the nsLTP from maize seedlings in complex with an array of fatty acids. A detailed comparison of the structures of maize nsLTP in complex with various ligands reveals a new binding mode in an nsLTP-oleate complex which has not been seen before. Furthermore, in the caprate complex, the ligand binds to the protein cavity in two orientations with equal occupancy. The volume of the hydrophobic cavity in the nsLTP from maize shows some variation depending on the size of the bound ligands. The structural plasticity of the ligand binding cavity and the predominant involvement of non-specific van der Waals interactions with the hydrophobic tail. of the ligands provide a structural explanation for the non-specificity of maize nsLTP. The hydrophobic cavity accommodates various ligands from C10 to Cia. The C18:1 ricinoleate with its hydroxyl group hydrogen bonding to Ala68 possibly mimics cutin monomer binding which is Of biological importance. Some of the myristate binding sites in human serum albumin resemble the maize nsLTP, implying the importance of a helical bundle in accommodating the non-specific binding of fatty acids. (C) 2001 Academic Press.
引用
收藏
页码:263 / 278
页数:16
相关论文
共 44 条
[21]   Barley lipid-transfer protein complexed with palmitoyl CoA: The structure reveals a hydrophobic binding site that can expand to fit both large and small lipid-like ligands [J].
Lerche, MH ;
Kragelund, BB ;
Bech, LM ;
Poulsen, FM .
STRUCTURE, 1997, 5 (02) :291-306
[22]   Solution structure of barley lipid transfer protein complexed with palmitate. Two different binding modes of palmitate in the homologous maize and barley nonspecific lipid transfer proteins [J].
Lerche, MH ;
Poulsen, FH .
PROTEIN SCIENCE, 1998, 7 (12) :2490-2498
[23]   CHARACTERIZATION OF THE NONSPECIFIC LIPID TRANSFER PROTEIN-EP2 FROM CARROT (DAUCUS-CAROTA L) [J].
MEIJER, EA ;
DEVRIES, SC ;
STERK, P ;
GADELLA, DWJ ;
WIRTZ, KWA ;
HENDRIKS, T .
MOLECULAR AND CELLULAR BIOCHEMISTRY, 1993, 123 (1-2) :159-166
[24]   CRYSTAL ORIENTATION AND X-RAY PATTERN PREDICTION ROUTINES FOR AREA-DETECTOR DIFFRACTOMETER SYSTEMS IN MACROMOLECULAR CRYSTALLOGRAPHY [J].
MESSERSCHMIDT, A ;
PFLUGRATH, JW .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1987, 20 (04) :306-315
[25]   DEVELOPMENTAL AND PATHOGEN-INDUCED EXPRESSION OF 3 BARLEY GENES ENCODING LIPID TRANSFER PROTEINS [J].
MOLINA, A ;
GARCIAOLMEDO, F .
PLANT JOURNAL, 1993, 4 (06) :983-991
[26]   LIPID TRANSFER PROTEINS (NSLTPS) FROM BARLEY AND MAIZE LEAVES ARE POTENT INHIBITORS OF BACTERIAL AND FUNGAL PLANT-PATHOGENS [J].
MOLINA, A ;
SEGURA, A ;
GARCIAOLMEDO, F .
FEBS LETTERS, 1993, 316 (02) :119-122
[27]   NEW-PROTEIN FOLDS [J].
MURZIN, AG .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1994, 4 (03) :441-449
[28]  
NICHOLLS A, 1993, BIOPHYS J, V64, P166
[29]   ACYL-BINDING LIPID-TRANSFER PROTEINS FROM RAPE SEEDLINGS, A NOVEL CATEGORY OF PROTEINS INTERACTING WITH LIPIDS [J].
OSTERGAARD, J ;
VERGNOLLE, C ;
SCHOENTGEN, F ;
KADER, JC .
BIOCHIMICA ET BIOPHYSICA ACTA, 1993, 1170 (02) :109-117
[30]   Solution structure of a lipid transfer protein extracted from rice seeds - Comparison with homologous proteins [J].
Poznanski, J ;
Sodano, P ;
Suh, SW ;
Lee, JY ;
Ptak, M ;
Vovelle, F .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1999, 259 (03) :692-708