Protein reconstitution and three-dimensional domain swapping: Benefits and constraints of covalency

被引:51
作者
Carey, Jannette [1 ]
Lindman, Stina
Bauer, Mikael
Linse, Sara
机构
[1] Princeton Univ, Dept Chem, Princeton, NJ 08544 USA
[2] Lund Univ, Ctr Chem, Dept Biophys Chem, S-22100 Lund, Sweden
关键词
stability; metastability; steric constraints; cooperativity; ligand binding;
D O I
10.1110/ps.072985007
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The phenomena of protein reconstitution and three-dimensional domain swapping reveal that highly similar structures can be obtained whether a protein is comprised of one or more polypeptide chains. In this review, we use protein reconstitution as a lens through which to examine the range of protein tolerance to chain interruptions and the roles of the primary structure in related features of protein structure and folding, including circular permutation, natively unfolded proteins, allostery, and amyloid fibril formation. The results imply that noncovalent interactions in a protein are sufficient to specify its structure under the constraints imposed by the covalent backbone.
引用
收藏
页码:2317 / 2333
页数:17
相关论文
共 118 条
[1]  
Amzel LM, 1997, PROTEINS, V28, P144
[2]  
ANDRIA G, 1971, J BIOL CHEM, V246, P7421
[3]   The domain-swapped dimer of cyanovirin-N is in a metastable folded state: Reconciliation of X-ray and NMR structures [J].
Barrientos, LG ;
Louis, JM ;
Botos, I ;
Mori, T ;
Han, ZZ ;
O'Keefe, BR ;
Boyd, MR ;
Wlodawer, A ;
Gronenborn, AM .
STRUCTURE, 2002, 10 (05) :673-686
[4]   Deposition diseases and 3D domain swapping [J].
Bennett, Melanie J. ;
Sawaya, Michael R. ;
Eisenberg, David .
STRUCTURE, 2006, 14 (05) :811-824
[5]   DOMAIN SWAPPING - ENTANGLING ALLIANCES BETWEEN PROTEINS [J].
BENNETT, MJ ;
CHOE, S ;
EISENBERG, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (08) :3127-3131
[6]   Fragment complementation studies of protein stabilization by hydrophobic core residues [J].
Berggård, T ;
Julenius, K ;
Ogard, A ;
Drakenberg, T ;
Linse, S .
BIOCHEMISTRY, 2001, 40 (05) :1257-1264
[7]   STRUCTURE OF THE HUMAN CLASS-I HISTOCOMPATIBILITY ANTIGEN, HLA-A2 [J].
BJORKMAN, PJ ;
SAPER, MA ;
SAMRAOUI, B ;
BENNETT, WS ;
STROMINGER, JL ;
WILEY, DC .
NATURE, 1987, 329 (6139) :506-512
[8]   Self-cleaving proteases [J].
Blair, Wade S. ;
Semler, Bert L. .
CURRENT OPINION IN CELL BIOLOGY, 1991, 3 (06) :1039-1045
[9]   Structural characterization of a soluble and partially folded class I major histocompatibility heavy chain/β2m heterodimer [J].
Bouvier, M ;
Wiley, DC .
NATURE STRUCTURAL BIOLOGY, 1998, 5 (05) :377-384
[10]   A PROTEIN CATALYTIC FRAMEWORK WITH AN N-TERMINAL NUCLEOPHILE IS CAPABLE OF SELF-ACTIVATION [J].
BRANNIGAN, JA ;
DODSON, G ;
DUGGLEBY, HJ ;
MOODY, PCE ;
SMITH, JL ;
TOMCHICK, DR ;
MURZIN, AG .
NATURE, 1995, 378 (6555) :416-419