Theoretical study of the catalytic mechanism of catechol oxidase

被引:39
作者
Guell, Mireia
Siegbahn, Per E. M.
机构
[1] Univ Girona, Inst Quim Computac, Girona 17071, Spain
[2] Stockholm Univ, Dept Biochem & Biophys, S-10691 Stockholm, Sweden
来源
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY | 2007年 / 12卷 / 08期
关键词
catechol oxidase; copper enzymes; O-2; cleavage; hybrid density functional theory;
D O I
10.1007/s00775-007-0293-z
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The mechanism for the oxidation of catechol by catechol oxidase has been studied using B3LYP hybrid density functional theory. On the basis of the X-ray structure of the enzyme, the molecular system investigated includes the first-shell protein ligands of the two metal centers as well as the second-shell ligand Cys92. The cycle starts out with the oxidized, open-shell singlet complex with oxidation states Cu-2(II,II) with a mu-eta(2) :eta(2) bridging peroxide, as suggested experimentally, which is obtained from the oxidation of Cu-2(I,I) by dioxygen. The substrate of each half-reaction is a catechol molecule approaching the dicopper complex: the first half-reaction involves Cu(I) oxidation by peroxide and the second one Cu(II) reduction. The quantitative potential energy profile of the reaction is discussed in connection with experimental data. Since no protons leave or enter the active site during the catalytic cycle, no external base is required. Unlike the previous density functional theory study, the dicopper complex has a charge of +2.
引用
收藏
页码:1251 / 1264
页数:14
相关论文
共 66 条
[1]  
Ackermann J, 2002, CHEM-EUR J, V8, P247, DOI 10.1002/1521-3765(20020104)8:1<247::AID-CHEM247>3.0.CO
[2]  
2-P
[3]  
Baruah P., 1959, J. Sci. Food Agric., V10, P125, DOI DOI 10.1002/jsfa.2740100209
[4]   Quantum chemical studies of dioxygen activation by mononuclear non-heme iron enzymes with the 2-His-1-carboxylate facial triad [J].
Bassan, A ;
Borowski, T ;
Siegbahn, PEM .
DALTON TRANSACTIONS, 2004, (20) :3153-3162
[5]   Biomimetic oxidations by dinuclear and trinuclear copper complexes [J].
Battaini, G ;
Granata, A ;
Monzani, E ;
Gullotti, M ;
Casella, L .
ADVANCES IN INORGANIC CHEMISTRY INCLUDING BIOINORGANIC STUDIES, VOL 58: HOMOGENEOUS BIOMIMETIC OXIDATION CATALYSIS, 2006, 58 :185-233
[6]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[7]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[8]   Dicopper(II) complexes of H-BPMP-type ligands:: pH-induced changes of redox, spectroscopic (19F NMR studies of fluorinated complexes), structural properties, and catecholase activities [J].
Belle, C ;
Beguin, C ;
Gautier-Luneau, I ;
Hamman, S ;
Philouze, C ;
Pierre, JL ;
Thomas, F ;
Torelli, S .
INORGANIC CHEMISTRY, 2002, 41 (03) :479-491
[9]  
Berreau LM, 1999, ANGEW CHEM INT EDIT, V38, P207, DOI 10.1002/(SICI)1521-3773(19990115)38:1/2<207::AID-ANIE207>3.0.CO
[10]  
2-U