Metabolomics technologies and metabolite identification

被引:280
作者
Moco, Sofia
Bino, Raoul J.
De Vos, Ric C. H.
Vervoort, Jacques
机构
[1] Univ Wageningen & Res Ctr, Biochem Lab, NL-6703 HA Wageningen, Netherlands
[2] Ctr BioSyst Genom, NL-6700 AB Wageningen, Netherlands
[3] Plant Res Int, NL-6700 AA Wageningen, Netherlands
[4] Univ Wageningen & Res Ctr, Lab Plant Physiol, NL-6703 BD Wageningen, Netherlands
关键词
Bioinformatics; database; identification; liquid chromatography; mass spectrometry; metabolite; metabolome; metabolomics; metabonomics; nuclear magnetic resonance;
D O I
10.1016/j.trac.2007.08.003
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
Metabolomics studies rely on the analysis of the multitude of small molecules (metabolites) present in a biological system. Most commonly, metabolomics is heavily supported by mass spectrometry (MS) and nuclear magnetic resonance (NMR) as parallel technologies that provide an overview of the metabolome and high-power compound elucidation. Over and above large-scale analysis, a major effort is needed for unequivocal identification of metabolites. The combination of liquid chromatography (LC)-MS and NMR is a powerful methodology for identifying metabolites. Better chemical characterization of the metabolome will undoubtedly enlarge knowledge of any biological system. (c) 2007 Elsevier Ltd. All rights reserved.
引用
收藏
页码:855 / 866
页数:12
相关论文
共 49 条
[1]  
[Anonymous], 2005, HyperPhysics
[2]  
Balogh MP, 2004, LC GC N AM, V22, P118
[3]   Potential of metabolomics as a functional genomics tool [J].
Bino, RJ ;
Hall, RD ;
Fiehn, O ;
Kopka, J ;
Saito, K ;
Draper, J ;
Nikolau, BJ ;
Mendes, P ;
Roessner-Tunali, U ;
Beale, MH ;
Trethewey, RN ;
Lange, BM ;
Wurtele, ES ;
Sumner, LW .
TRENDS IN PLANT SCIENCE, 2004, 9 (09) :418-425
[4]   Accurate mass measurement for the determination of elemental formula - A tutorial [J].
Bristow, AWT .
MASS SPECTROMETRY REVIEWS, 2006, 25 (01) :99-111
[5]   Metabolomics applications of FT-ICR mass spectrometry [J].
Brown, SC ;
Kruppa, G ;
Dasseux, JL .
MASS SPECTROMETRY REVIEWS, 2005, 24 (02) :223-231
[6]   An introduction to quadrupole-time-of-flight mass spectrometry [J].
Chernushevich, IV ;
Loboda, AV ;
Thomson, BA .
JOURNAL OF MASS SPECTROMETRY, 2001, 36 (08) :849-865
[7]  
Claridge T. D. W., 2008, HIGH RESOLUTION NMR
[8]   Statistical heterospectroscopy, an approach to the integrated analysis of NMR and UPLC-MS data sets: Application in metabonomic toxicology studies [J].
Crockford, DJ ;
Holmes, E ;
Lindon, JC ;
Plumb, RS ;
Zirah, S ;
Bruce, SJ ;
Rainville, P ;
Stumpf, CL ;
Nicholson, JK .
ANALYTICAL CHEMISTRY, 2006, 78 (02) :363-371
[9]   Atomic weights of the elements:: Review 2000 -: (IUPAC technical report) [J].
De Laeter, JR ;
Böhlke, JK ;
De Bièvre, P ;
Hidaka, H ;
Peiser, HS ;
Rosman, KJR ;
Taylor, PDP .
PURE AND APPLIED CHEMISTRY, 2003, 75 (06) :683-800
[10]   Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry [J].
De Vos, Ric C. H. ;
Moco, Sofia ;
Lommen, Arjen ;
Keurentjes, Joost J. B. ;
Bino, Raoul J. ;
Hall, Robert D. .
NATURE PROTOCOLS, 2007, 2 (04) :778-791