Epigenomics of T cell activation, differentiation, and memory

被引:75
作者
Cuddapah, Suresh [1 ]
Barski, Artem [1 ]
Zhao, Keji [1 ]
机构
[1] NHLBI, Lab Mol Immunol, NIH, Bethesda, MD 20892 USA
基金
美国国家卫生研究院;
关键词
CYTOKINE GENE-EXPRESSION; HUMAN GENOME; HISTONE MODIFICATIONS; CHROMATIN SIGNATURES; RNA-POLYMERASE; STEM-CELLS; TGF-BETA; CHIP-SEQ; PLASTICITY; TRANSCRIPTION;
D O I
10.1016/j.coi.2010.02.007
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Activation of T cells is an essential step in the immunological response to infection. Although activation of naIve T cells results in proliferation and slow differentiation into cytokine-producing effector cells, antigen engagement with memory cells leads to cytokine production immediately. Even though the cell surface signaling events are similar in both the cases, the outcome is different, suggesting that distinct regulatory mechanisms may exist downstream of the activation signals. Recent advances in the understanding of global epigenetic patterns in T cells have resulted in the appreciation of the role of epigenetic mechanisms in processes such as activation and differentiation. In this review we discuss recent data suggesting that naive T cell activation, differentiation, and lineage commitment result in epigenetic changes and a fine balance between different histone modifications is required. On the other hand, memory T cells are poised and do not require epigenetic changes for short-term activation.
引用
收藏
页码:341 / 347
页数:7
相关论文
共 66 条
[21]   NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly [J].
Gilchrist, Daniel A. ;
Nechaev, Sergei ;
Lee, Chanhyo ;
Ghosh, Saikat Kumar B. ;
Collins, Jennifer B. ;
Li, Leping ;
Gilmour, David S. ;
Adelman, Karen .
GENES & DEVELOPMENT, 2008, 22 (14) :1921-1933
[22]   Progress and challenges in profiling the dynamics of chromatin and transcription factor binding with DNA microarrays [J].
Hanlon, SE ;
Lieb, JD .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2004, 14 (06) :697-705
[23]   Control of Inducible Gene Expression by Signal-Dependent Transcriptional Elongation [J].
Hargreaves, Diana C. ;
Horng, Tiffany ;
Medzhitov, Ruslan .
CELL, 2009, 138 (01) :129-145
[24]   Memory CD4 T cells emerge from effector T-cell progenitors [J].
Harrington, Laurie E. ;
Janowski, Karen M. ;
Oliver, James R. ;
Zajac, Allan J. ;
Weaver, Casey T. .
NATURE, 2008, 452 (7185) :356-U8
[25]   A distal conserved sequence element controls Ifng gene expression by T cells and NK cells [J].
Hatton, Robin D. ;
Harrington, Laurie E. ;
Luther, Rita J. ;
Wakefield, Therese ;
Janowski, Karen M. ;
Oliver, James R. ;
Lallone, Roger L. ;
Murphy, Kenneth M. ;
Weaver, Casey T. .
IMMUNITY, 2006, 25 (05) :717-729
[26]   Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome [J].
Heintzman, Nathaniel D. ;
Stuart, Rhona K. ;
Hon, Gary ;
Fu, Yutao ;
Ching, Christina W. ;
Hawkins, R. David ;
Barrera, Leah O. ;
Van Calcar, Sara ;
Qu, Chunxu ;
Ching, Keith A. ;
Wang, Wei ;
Weng, Zhiping ;
Green, Roland D. ;
Crawford, Gregory E. ;
Ren, Bing .
NATURE GENETICS, 2007, 39 (03) :311-318
[27]   Histone modifications: Combinatorial complexity or cumulative simplicity? [J].
Henikoff, S .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (15) :5308-5309
[28]   Tat-associated kinase, TAK, activity is regulated by distinct mechanisms in peripheral blood lymphocytes and promonocytic cell lines [J].
Herrmann, CH ;
Carroll, RG ;
Wei, P ;
Jones, KA ;
Rice, AP .
JOURNAL OF VIROLOGY, 1998, 72 (12) :9881-9888
[29]  
Impey S, 2004, CELL, V119, P1041, DOI 10.1016/S0092-8674(04)01159-6
[30]   Not-so-great expectations: re-assessing the essence of T-cell memory [J].
Intlekofer, Andrew M. ;
Wherry, E. John ;
Reiner, Steven L. .
IMMUNOLOGICAL REVIEWS, 2006, 211 :203-213