Inhibition of protein crystallization by evolutionary negative design

被引:69
作者
Doye, JPK [1 ]
Louis, AA [1 ]
Vendruscolo, M [1 ]
机构
[1] Univ Cambridge, Chem Lab, Cambridge CB2 1EW, England
关键词
D O I
10.1088/1478-3967/1/1/P02
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Why are proteins so hard to crystallize? We propose an 'evolutionary negative design' principle to explain this difficulty. Proteins have evolved to avoid crystallization because crystallization compromises the viability of the cell. Evolutionary negative design is supported by much evidence in the literature, including the effect of mutations on the crystallizability of a protein, the correlations found in the properties of crystal contacts in bioinformatics databases, and the positive use of protein crystallization by bacteria and viruses.
引用
收藏
页码:P9 / P13
页数:5
相关论文
共 40 条
[21]   Aggresomes, inclusion bodies and protein aggregation [J].
Kopito, RR .
TRENDS IN CELL BIOLOGY, 2000, 10 (12) :524-530
[22]   Analysis of accessible surface of residues in proteins [J].
Lins, L ;
Thomas, A ;
Brasseur, R .
PROTEIN SCIENCE, 2003, 12 (07) :1406-1417
[23]  
Lo Conte L, 1999, J MOL BIOL, V285, P2177
[24]   Structure of the RGS-like domain from PDZ-RhoGEF: Linking heterotrimeric G protein-coupled signaling to Rho GTPases [J].
Longenecker, KL ;
Lewis, ME ;
Chikumi, H ;
Gutkind, JS ;
Derewenda, ZS .
STRUCTURE, 2001, 9 (07) :559-569
[25]   Protein crystallization by rational mutagenesis of surface residues: Lys to Ala mutations promote crystallization of RhoGDI [J].
Longenecker, KL ;
Garrard, SM ;
Sheffield, PJ ;
Derewenda, ZS .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2001, 57 :679-688
[26]   The impact of Glu→Ala and Glu→Asp mutations on the crystallization properties of RhoGDI:: the structure of RhoGDI at 1.3 Å resolution [J].
Mateja, A ;
Devedjiev, Y ;
Krowarsch, D ;
Longenecker, K ;
Dauter, Z ;
Otlewski, J ;
Derewenda, ZS .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2002, 58 :1983-1991
[27]   STUDIES ON ENGINEERING CRYSTALLIZABILITY BY MUTATION OF SURFACE RESIDUES OF HUMAN THYMIDYLATE SYNTHASE [J].
MCELROY, HE ;
SISSON, GW ;
SCHOETTLIN, WE ;
AUST, RM ;
VILLAFRANCA, JE .
JOURNAL OF CRYSTAL GROWTH, 1992, 122 (1-4) :265-272
[28]  
McPherson A., 1999, CRYSTALLIZATION BIOL
[29]   Liquid-liquid phase separation in supersaturated lysozyme solutions and associated precipitate formation/crystallization [J].
Muschol, M ;
Rosenberger, F .
JOURNAL OF CHEMICAL PHYSICS, 1997, 107 (06) :1953-1962
[30]   Crystal cataracts: Human genetic cataract caused by protein crystallization [J].
Pande, A ;
Pande, J ;
Asherie, N ;
Lomakin, A ;
Ogun, O ;
King, J ;
Benedek, GB .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (11) :6116-6120