Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883T)

被引：19

作者：

Chovatia, Mansi ^{[1
]}

Sikorski, Johannes ^{[2
]}

Schroeder, Maren ^{[2
]}

Lapidus, Alla ^{[1
]}

Nolan, Matt ^{[1
]}

Tice, Hope ^{[1
]}

Del Rio, Tijana Glavina ^{[1
]}

Copeland, Alex ^{[1
]}

Cheng, Jan-Fang ^{[1
]}

Lucas, Susan ^{[2
]}

Chen, Feng ^{[2
]}

Bruce, David ^{[1
,3
]}

Goodwin, Lynne ^{[1
,3
]}

Pitluck, Sam ^{[1
]}

Ivanova, Natalia ^{[1
]}

Mavromatis, Konstantinos ^{[1
]}

Ovchinnikova, Galina ^{[1
]}

Pati, Amrita ^{[1
]}

Chen, Amy ^{[4
]}

Palaniappan, Krishna ^{[4
]}

Land, Miriam ^{[1
,5
]}

Hauser, Loren ^{[1
,5
]}

Chang, Yun-Juan ^{[1
,5
]}

Jeffries, Cynthia D. ^{[1
,5
]}

Chain, Patrick ^{[1
,6
]}

Saunders, Elizabeth ^{[3
]}

Detter, John C. ^{[1
,3
]}

Brettin, Thomas ^{[1
,3
]}

Rohde, Manfred ^{[7
]}

Goeker, Markus ^{[2
]}

Spring, Stefan ^{[2
]}

Bristow, Jim ^{[1
]}

Markowitz, Victor ^{[4
]}

Hugenholtz, Philip ^{[1
]}

Kyrpides, Nikos C. ^{[1
]}

Klenk, Hans-Peter ^{[2
]}

Eisen, Jonathan A. ^{[1
,8
]}

机构：

[1] US DOE, Joint Genome Inst, Walnut Creek, CA USA

[2] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany

[3] Los Alamos Natl Lab, Los Alamos, NM USA

[4] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA

[5] Oak Ridge Natl Lab, Oak Ridge, TN USA

[6] Lawrence Livermore Natl Lab, Livermore, CA USA

[7] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany

[8] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA

来源：

STANDARDS IN GENOMIC SCIENCES | 2009年 / 1卷 / 03期

关键词：

strictly anaerobic; amino acid fermentation; thermophile; oxidative decarboxylation; lithotrophic; co-culture with Methanobacterium thermoautotrophicum; Synergistales; Synergistetes; EMENDED DESCRIPTION; PROPOSAL; SYSTEM; NOV;

D O I：

10.4056/sigs.40645

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Thermanaerovibrio acidaminovorans (Guangsheng et al. 1997) Baena et al. 1999 is the type species of the genus Thermanaerovibrio and is of phylogenetic interest because of the very isolated location of the novel phylum Synergistetes. T. acidaminovorans Su883(T) is a Gram-negative, motile, non-spore-forming bacterium isolated from an anaerobic reactor of a sugar refinery in The Netherlands. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first completed genome sequence from a member of the phylum Synergistetes. The 1,848,474 bp long single replicon genome with its 1765 protein-coding and 60 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

引用

页码：254 / 261

页数：8