Simultaneous definition of high resolution protein structure and backbone conformational dynamics using NMR residual dipolar couplings

被引:38
作者
Bouvignies, Guillaume [1 ]
Markwick, Phineus R. L. [1 ]
Blackledge, Martin [1 ]
机构
[1] Inst Biol Struct, F-38027 Grenoble, France
关键词
D O I
10.1002/cphc.200700353
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Despite the importance of molecular dynamics for biological activity, most approaches to protein structure determination, whether based on crystallographic or solution studies, propose three-dimensional atomic representations of a single configuration that take no account of conformational fluctuation. Non-averaged onisotropic NMR interactions, such as residual dipolar couplings, that become measurable under conditions of weak 'I alignment, provide sensitive probes of both molecular structure and dynamics. Residual dipolar couplings are becoming increasingly powerful for the study of proteins in solution. In this minireview we present their use for the simultaneous determination of protein structure and dynamics.
引用
收藏
页码:1901 / 1909
页数:9
相关论文
共 76 条
[71]   Alignment of biopolymers in strained gels: A new way to create detectable dipole-dipole couplings in high-resolution biomolecular NMR [J].
Tycko, R ;
Blanco, FJ ;
Ishii, Y .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (38) :9340-9341
[72]   Evaluation of backbone proton positions and dynamics in a small protein by liquid crystal NMR spectroscopy [J].
Ulmer, TS ;
Ramirez, BE ;
Delaglio, F ;
Bax, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2003, 125 (30) :9179-9191
[73]   Exact solutions for internuclear vectors and backbone dihedral angles from NH residual dipolar couplings in two media, and their application in a systematic search algorithm for determining protein backbone structure [J].
Wang, LC ;
Donald, BR .
JOURNAL OF BIOMOLECULAR NMR, 2004, 29 (03) :223-242
[74]   Exact solutions for chemical bond orientations from residual dipolar couplings [J].
Wedemeyer, WJ ;
Rohl, CA ;
Scheraga, HA .
JOURNAL OF BIOMOLECULAR NMR, 2002, 22 (02) :137-151
[75]  
Wuthrich K., 1986, NMR PROTEINS NUCL AC
[76]   Evaluation of uncertainty in alignment tensors obtained from dipolar couplings [J].
Zweckstetter, M ;
Bax, A .
JOURNAL OF BIOMOLECULAR NMR, 2002, 23 (02) :127-137