Initial analysis of 750 MHz NMR spectra of selectively N-15-G,U labelled E-coli 5S rRNA

被引:14
作者
Grune, M
Gorlach, M
Soskic, V
Klussmann, S
Bald, R
Furste, JP
Erdmann, VA
Brown, LR
机构
[1] INST MOL BIOTECHNOL EV, D-07708 JENA, GERMANY
[2] FREE UNIV BERLIN, INST BIOCHEM, D-14195 BERLIN, GERMANY
关键词
NMR; N-15; labelling; ribosome; 5S rRNA; E-domain; E-coli;
D O I
10.1016/0014-5793(96)00361-4
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The overall folding of an RNA molecule is reflected in its base pairing pattern. The identification of that pattern provides a first step towards the determination of the structure of an RNA molecule. We show that the application of heteronuclear NMR methods at 750 MHz to E. coli 5S rRNA (120 nucleotides) selectively labelled with N-15 in guanine and uridine allows observation of base pairing patterns for a larger RNA molecule. We also present evidence that the fold of the E-domain of the 5S rRNA (nt 79-97) as a contiguous part of the 5S rRNA and as an isolated molecule is virtually the same.
引用
收藏
页码:114 / 118
页数:5
相关论文
共 41 条
[1]  
Aboul-Ela Fareed, 1995, Current Opinion in Biotechnology, V6, P89, DOI 10.1016/0958-1669(95)80014-X
[2]   REARRANGEMENT OF CONFORMATION OF ESCHERICHIA COLI 55 RNA [J].
AUBERT, M ;
SCOTT, JF ;
REYNIER, M ;
MONIER, R .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1968, 61 (01) :292-&
[3]   PREPARATION OF ISOTOPICALLY LABELED RIBONUCLEOTIDES FOR MULTIDIMENSIONAL NMR-SPECTROSCOPY OF RNA [J].
BATEY, RT ;
INADA, M ;
KUJAWINSKI, E ;
PUGLISI, JD ;
WILLIAMSON, JR .
NUCLEIC ACIDS RESEARCH, 1992, 20 (17) :4515-4523
[4]   ACCESSIBILITY OF ESCHERICHIA-COLI S-5 RNA BASE RESIDUES TO CHEMICAL REAGENTS - INFLUENCE OF CHEMICAL ALTERATIONS ON AFFINITY OF S-5 RNA FOR S-50 SUBUNIT STRUCTURE [J].
BELLEMARE, G ;
JORDAN, BR ;
ROCCASER.J ;
MONIER, R .
BIOCHIMIE, 1972, 54 (11-1) :1453-1466
[5]   GENE ORGANIZATION AND PRIMARY STRUCTURE OF A RIBOSOMAL-RNA OPERON FROM ESCHERICHIA-COLI [J].
BROSIUS, J ;
DULL, TJ ;
SLEETER, DD ;
NOLLER, HF .
JOURNAL OF MOLECULAR BIOLOGY, 1981, 148 (02) :107-127
[6]  
CECH TR, 1986, ANNU REV BIOCHEM, V55, P599, DOI 10.1146/annurev.bi.55.070186.003123
[7]   DIFFERENT CONFORMATIONAL FORMS OF ESCHERICHIA-COLI AND RAT-LIVER 5S RIBOSOMAL-RNA REVEALED BY PB(II)-INDUCED HYDROLYSIS [J].
CIESIOLKA, J ;
LORENZ, S ;
ERDMANN, VA .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1992, 204 (02) :583-589
[9]   CLONING AND EXPRESSION OF THE GENE FOR BACTERIOPHAGE-T7 RNA-POLYMERASE [J].
DAVANLOO, P ;
ROSENBERG, AH ;
DUNN, JJ ;
STUDIER, FW .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1984, 81 (07) :2035-2039
[10]   N-15-LABELED 5S RNA - IDENTIFICATION OF URIDINE BASE-PAIRS IN ESCHERICHIA-COLI 5S RNA BY H-1-N-15 MULTIPLE QUANTUM NMR [J].
DAVIS, DR ;
YAMAIZUMI, Z ;
NISHIMURA, S ;
POULTER, CD .
BIOCHEMISTRY, 1989, 28 (09) :4105-4108