A survey of quantitative real-time polymerase chain reaction internal reference genes for expression studies in Brassica napus

被引:103
作者
Chen, Xue [1 ]
Truksa, Martin [1 ]
Shah, Saleh [2 ]
Weselake, Randall J. [1 ]
机构
[1] Univ Alberta, Dept Agr Food & Nutr Sci, Agr Lipid Biotechnol Program, Edmonton, AB T6H 2P5, Canada
[2] Alberta Innovates Technol Futures, Plant Biotechnol, Vegreville, AB T9C 1T4, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
qRT-PCR; Reference gene; Brassica napus; Embryo; geNORM; SEED MATURATION; PCR; NORMALIZATION;
D O I
10.1016/j.ab.2010.05.032
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Eight reference genes of Brassica napus were evaluated using quantitative real-time polymerase chain reaction (qRT-PCR) data, focusing on vegetative tissues and developing embryos. Analyses of expression stability indicated that UP1, UBC9, UBC21, and TIP41 were the top four choices as stably expressed reference genes for vegetative tissues, whereas ACT7, UBC21, TIP41, and PP2A were the top four choices for maturing embryos. In addition, radiolabeling of overall messenger RNA (mRNA) of maturing embryos indicated that the expression patterns of the top four ranked reference genes reflected the overall mRNA content changes in maturing embryos. Crown Copyright (C) 2010 Published by Elsevier Inc. All rights reserved.
引用
收藏
页码:138 / 140
页数:3
相关论文
共 14 条
[1]   Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis [J].
Czechowski, T ;
Stitt, M ;
Altmann, T ;
Udvardi, MK ;
Scheible, WR .
PLANT PHYSIOLOGY, 2005, 139 (01) :5-17
[2]   Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process [J].
Exposito-Rodriguez, Marino ;
Borges, Andres A. ;
Borges-Perez, Andres ;
Perez, Jose A. .
BMC PLANT BIOLOGY, 2008, 8 (1)
[3]   Gene expression during seed maturation in Brassica napus in relation to the induction of secondary dormancy [J].
Fei, Houman ;
Tsang, Edward ;
Cutler, Adrian J. .
GENOMICS, 2007, 89 (03) :419-428
[4]   Expression, mapping, and genetic variability of Brassica napus disease resistance gene analogues [J].
Fourmann, M ;
Charlot, F ;
Froger, N ;
Delourme, R ;
Brunel, D .
GENOME, 2001, 44 (06) :1083-1099
[5]  
Harada JJ, 1997, ADV CELL MOL BIOL PL, V4, P545
[6]   Probing the endosperm gene expression landscape in Brassica napus [J].
Huang, Yi ;
Chen, Liang ;
Wang, Liping ;
Vijayan, Kannan ;
Phan, Sieu ;
Liu, Ziying ;
Wan, Lianglu ;
Ross, Andrew ;
Xiang, Daoquan ;
Datla, Raju ;
Pan, Youlian ;
Zou, Jitao .
BMC GENOMICS, 2009, 10
[7]   Per cell normalization method for mRNA measurement by quantitative PCR and microarrays [J].
Kanno, J ;
Aisaki, K ;
Igarashi, K ;
Nakatsu, N ;
Ono, A ;
Kodama, Y ;
Nagao, T .
BMC GENOMICS, 2006, 7 (1)
[8]   Analysis of the genome sequence of the flowering plant Arabidopsis thaliana [J].
Kaul, S ;
Koo, HL ;
Jenkins, J ;
Rizzo, M ;
Rooney, T ;
Tallon, LJ ;
Feldblyum, T ;
Nierman, W ;
Benito, MI ;
Lin, XY ;
Town, CD ;
Venter, JC ;
Fraser, CM ;
Tabata, S ;
Nakamura, Y ;
Kaneko, T ;
Sato, S ;
Asamizu, E ;
Kato, T ;
Kotani, H ;
Sasamoto, S ;
Ecker, JR ;
Theologis, A ;
Federspiel, NA ;
Palm, CJ ;
Osborne, BI ;
Shinn, P ;
Conway, AB ;
Vysotskaia, VS ;
Dewar, K ;
Conn, L ;
Lenz, CA ;
Kim, CJ ;
Hansen, NF ;
Liu, SX ;
Buehler, E ;
Altafi, H ;
Sakano, H ;
Dunn, P ;
Lam, B ;
Pham, PK ;
Chao, Q ;
Nguyen, M ;
Yu, GX ;
Chen, HM ;
Southwick, A ;
Lee, JM ;
Miranda, M ;
Toriumi, MJ ;
Davis, RW .
NATURE, 2000, 408 (6814) :796-815
[9]   Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data [J].
Ramakers, C ;
Ruijter, JM ;
Deprez, RHL ;
Moorman, AFM .
NEUROSCIENCE LETTERS, 2003, 339 (01) :62-66
[10]   Product differentiation by analysis of DNA melting curves during the polymerase chain reaction [J].
Ririe, KM ;
Rasmussen, RP ;
Wittwer, CT .
ANALYTICAL BIOCHEMISTRY, 1997, 245 (02) :154-160