Faster-X evolution: Theory and evidence from Drosophila

被引:64
作者
Charlesworth, Brian [1 ]
Campos, Jose L. [1 ,2 ]
Jackson, Benjamin C. [1 ]
机构
[1] Univ Edinburgh, Sch Biol Sci, Inst Evolutionary Biol, Edinburgh, Midlothian, Scotland
[2] Univ Edinburgh, MRC Inst Genet & Mol Med, MRC Human Genet Unit, Edinburgh, Midlothian, Scotland
基金
英国生物技术与生命科学研究理事会;
关键词
Drosophila; faster-X effect; gene expression; natural selection; sex bias; EFFECTIVE POPULATION-SIZE; BIASED GENE-EXPRESSION; ADAPTIVE PROTEIN EVOLUTION; AMINO-ACID SUBSTITUTION; CODON USAGE BIAS; MOLECULAR EVOLUTION; RECOMBINATION RATE; DELETERIOUS MUTATIONS; BACKGROUND SELECTION; SEQUENCE EVOLUTION;
D O I
10.1111/mec.14534
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A faster rate of adaptive evolution of X-linked genes compared with autosomal genes can be caused by the fixation of recessive or partially recessive advantageous mutations, due to the full expression of X-linked mutations in hemizygous males. Other processes, including recombination rate and mutation rate differences between X chromosomes and autosomes, may also cause faster evolution of X-linked genes. We review population genetics theory concerning the expected relative values of variability and rates of evolution of X-linked and autosomal DNA sequences. The theoretical predictions are compared with data from population genomic studies of several species of Drosophila. We conclude that there is evidence for adaptive faster-X evolution of several classes of functionally significant nucleotides. We also find evidence for potential differences in mutation rates between X-linked and autosomal genes, due to differences in mutational bias towards GC to AT mutations. Many aspects of the data are consistent with the male hemizygosity model, although not all possible confounding factors can be excluded.
引用
收藏
页码:3753 / 3771
页数:19
相关论文
共 158 条
[41]   Effective population size and patterns of molecular evolution and variation [J].
Charlesworth, Brian .
NATURE REVIEWS GENETICS, 2009, 10 (03) :195-205
[42]   The McDonald-Kreitman test and slightly deleterious mutations [J].
Charlesworth, Jane ;
Eyre-Walker, Adam .
MOLECULAR BIOLOGY AND EVOLUTION, 2008, 25 (06) :1007-1015
[43]   Evidence for complex selection on four-fold degenerate sites in Drosophila melanogaster [J].
Clemente, F. ;
Vogl, C. .
JOURNAL OF EVOLUTIONARY BIOLOGY, 2012, 25 (12) :2582-2595
[44]  
Comeron JM, 1995, J MOL EVOL, V41, P1152, DOI 10.1007/BF00173196
[45]   Background Selection as Baseline for Nucleotide Variation across the Drosophila Genome [J].
Comeron, Josep M. .
PLOS GENETICS, 2014, 10 (06)
[46]   The Many Landscapes of Recombination in Drosophila melanogaster [J].
Comeron, Josep M. ;
Ratnappan, Ramesh ;
Bailin, Samuel .
PLOS GENETICS, 2012, 8 (10)
[47]   Impact of Genetic Architecture on the Relative Rates of X versus Autosomal Adaptive Substitution [J].
Connallon, Tim ;
Singh, Nadia D. ;
Clark, Andrew G. .
MOLECULAR BIOLOGY AND EVOLUTION, 2012, 29 (08) :1933-1942
[48]   Association between Sex-Biased Gene Expression and Mutations with Sex-Specific Phenotypic Consequences in Drosophila [J].
Connallon, Tim ;
Clark, Andrew G. .
GENOME BIOLOGY AND EVOLUTION, 2011, 3 :151-155
[49]   Molecular Mechanisms and Evolutionary Processes Contributing to Accelerated Divergence of Gene Expression on the Drosophila X Chromosome [J].
Coolon, Joseph D. ;
Stevenson, Kraig R. ;
McManus, C. Joel ;
Yang, Bing ;
Graveley, Brenton R. ;
Wittkopp, Patricia J. .
MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (10) :2605-2615
[50]   Using comparative genomic data to test for fast-x evolution [J].
Counterman, BA ;
Ortíz-Barrientos, D ;
Noor, MAF .
EVOLUTION, 2004, 58 (03) :656-660