Structure of cytochrome c7 from Desulfuromonas acetoxidans at 1.9 Å resolution

被引:38
作者
Czjzek, M
Arnoux, P
Haser, R
Shepard, W
机构
[1] CNRS, Lab Architecture & Fonct Macromol Biol, F-13402 Marseille 20, France
[2] Univ Aix Marseille 1, F-13402 Marseille 20, France
[3] Univ Aix Marseille 2, F-13402 Marseille 20, France
[4] CNRS Lyon, Inst Biol Chem & Chim Prot, F-69367 Marseille 07, France
[5] Ctr Univ Paris Sud, Lab Utilisat Rayonnement Electromagnet, F-91898 Orsay, France
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2001年 / 57卷
关键词
D O I
10.1107/S0907444901003481
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Multihaem cytochromes play a key role in electron-transport reactions in the periplasm of sulfate- and sulfur-reducing bacteria. The redox proteins grouped in the c(3) superfamily also display metal-reducing activities, which make them interesting biotechnological tools. The crystal structure of the fully oxidized cytochrome c(7) from Desulfuromonas acetoxidans has been solved by combined molecular-replacement and MAD methods. The structure has been refined at 1.9 Angstrom resolution to an R value of 19.1% (R-free = 24.3%) and includes three haems and 116 water molecules. The protein displays the cytochrome c(3) fold in a highly minimized form, while haem 2 and the surrounding protein environment are missing. The geometry of haem packing and of the haem axial ligands and propionates are described and compared with that of c(3) cytochromes. The crystal structure is compared with the solution structure recently obtained by NMR methods and with its homologue cytochromes of the c(3) superfamily. Comparison of the high number of available structures makes it possible to analyze the structural role of the few highly conserved residues, in addition to the cysteines and histidines that link the porphyrin rings and the Fe atoms to the protein chain.
引用
收藏
页码:670 / 678
页数:9
相关论文
共 53 条
[41]   Nine-haem cytochrome c from Desulfovibrio desulfuricans ATCC 27774:: primary sequence determination, crystallographic refinement at 1.8 and modelling studies of its interaction with the tetrahaem cytochrome c3 [J].
Matias, PM ;
Saraiva, LM ;
Soares, CM ;
Coelho, AV ;
LeGall, J ;
Carrondo, MA .
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 1999, 4 (04) :478-494
[42]   RASTER3D VERSION-2.0 - A PROGRAM FOR PHOTOREALISTIC MOLECULAR GRAPHICS [J].
MERRITT, EA ;
MURPHY, MEP .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :869-873
[43]   Heteronuclear NMR and soft docking:: An experimental approach for a structural model of the cytochrome c553-ferredoxin complex [J].
Morelli, X ;
Dolla, A ;
Czjzek, M ;
Palma, PN ;
Blasco, F ;
Krippahl, L ;
Moura, JJG ;
Guerlesquin, F .
BIOCHEMISTRY, 2000, 39 (10) :2530-2537
[44]   Structural model of the Fe-hydrogenase/cytochrome c553 complex combining transverse relaxation-optimized spectroscopy experiments and soft docking calculations [J].
Morelli, X ;
Czjzek, M ;
Hatchikian, CE ;
Bornet, O ;
Fontecilla-Camps, JC ;
Palma, NP ;
Moura, JJG ;
Guerlesquin, F .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (30) :23204-23210
[45]   NMR-STUDIES OF DESULFUROMONAS-ACETOXIDANS CYTOCHROME-C551.5 (C7) [J].
MOURA, JJG ;
MOORE, GR ;
WILLIAMS, RJP ;
PROBST, I ;
LEGALL, J ;
XAVIER, AV .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1984, 144 (03) :433-440
[46]   AMORE - AN AUTOMATED PACKAGE FOR MOLECULAR REPLACEMENT [J].
NAVAZA, J .
ACTA CRYSTALLOGRAPHICA SECTION A, 1994, 50 :157-163
[47]   Crystal structure of the oxidised and reduced acidic cytochrome c3 from Desulfovibrio africanus [J].
Norager, S ;
Legrand, P ;
Pieulle, L ;
Hatchikian, C ;
Roth, M .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 290 (04) :881-902
[48]  
POSTGATE JR, 1954, BIOCHEM J, V56, pR11
[49]   CYTOCHROME-C-551.5-(C7) FROM DESULFUROMONAS-ACETOXIDANS [J].
PROBST, I ;
BRUSCHI, M ;
PFENNIG, N ;
LEGALL, J .
BIOCHIMICA ET BIOPHYSICA ACTA, 1977, 460 (01) :58-64
[50]   DISSIMILATORY FE(III) REDUCTION BY THE MARINE MICROORGANISM DESULFUROMONAS-ACETOXIDANS [J].
RODEN, EE ;
LOVLEY, DR .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1993, 59 (03) :734-742