The human SUMF1 gene, required for posttranslational sulfatase modification, defines a new gene family which is conserved from pro- to eukaryotes

被引:60
作者
Landgrebe, J [1 ]
Dierks, T [1 ]
Schmidt, B [1 ]
von Figura, K [1 ]
机构
[1] Univ Gottingen, Abt Biochem 2, D-37073 Gottingen, Germany
关键词
formylglycine-generating enzyme; multiple sulfatase deficiency; DUF323; sulfatase gene family; sulfatase modifying factor;
D O I
10.1016/S0378-1119(03)00746-7
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Recently, the human C-alpha-formylglycine (FGly)-generating enzyme (FGE), whose deficiency causes the autosomal-recessively transmitted lysosomal storage disease multiple sulfatase deficiency (MSD), has been identified. In sulfatases, FGE posttranslationally converts a cysteine residue to FGly, which is part of the catalytic site and is essential for sulfatase activity. FGE is encoded by the sulfatase modifying factor 1 (SUMF1) gene. which defines a new gene family comprising orthologs from prokaryotes to higher eukaryotes. The genomes of E. coli, S. cerevisiae and C. elegans lack SUMF1, indicating a phylogenetic gap and the existence of an alternative FGly-generating system. The genomes of vertebrates including mouse, man and pufferfish contain a sulfatase modifying factor 2 (SUMF2) gene encoding an FGE paralog of unknown function. SUMF2 evolved from a single exon SUMF1 gene as found in diptera prior to divergent intron acquisition. In several prokaryotic genomes, the SUMF1 gene is cotranscribed with genes encoding sulfatases which require FGly modification. The FGE protein contains a single domain that is made up of three highly conserved subdomains spaced by nonconserved sequences of variable lengths. The similarity among the eukaryotic FGE orthologs varies between 72% and 100% for the three subdomains and is highest for the C-terminal subdomain, which is a hotspot for mutations in MSD patients. (C) 2003 Elsevier B.V. All rights reserved.
引用
收藏
页码:47 / 56
页数:10
相关论文
共 36 条
[21]   PRODORIC:: prokaryotic database of gene regulation [J].
Münch, R ;
Hiller, K ;
Barg, H ;
Heldt, D ;
Linz, S ;
Wingender, E ;
Jahn, D .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :266-269
[22]   Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites [J].
Nielsen, H ;
Engelbrecht, J ;
Brunak, S ;
vonHeijne, G .
PROTEIN ENGINEERING, 1997, 10 (01) :1-6
[23]   WWW-Query: An on-line retrieval system for biological sequence banks [J].
Perriere, G ;
Gouy, M .
BIOCHIMIE, 1996, 78 (05) :364-369
[24]   EMBOSS: The European molecular biology open software suite [J].
Rice, P ;
Longden, I ;
Bleasby, A .
TRENDS IN GENETICS, 2000, 16 (06) :276-277
[25]   Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria [J].
Rodionov, DA ;
Mironov, AA ;
Gelfand, MS .
FEMS MICROBIOLOGY LETTERS, 2001, 205 (02) :305-314
[26]   RegulonDB (version 3.2):: transcriptional regulation and operon organization in Escherichia coli K-12 [J].
Salgado, H ;
Santos-Zavaleta, A ;
Gama-Castro, S ;
Millén-Zárate, D ;
Díaz-Peredo, E ;
Sánchez-Solano, F ;
Pérez-Rueda, E ;
Bonavides-Martínez, C ;
Collado-Vides, J .
NUCLEIC ACIDS RESEARCH, 2001, 29 (01) :72-74
[27]   Computational analysis of bacterial sulfatases and their modifying enzymes [J].
Schirmer, A ;
Kolter, R .
CHEMISTRY & BIOLOGY, 1998, 5 (08) :R181-R186
[28]   A NOVEL AMINO-ACID MODIFICATION IN SULFATASES THAT IS DEFECTIVE IN MULTIPLE SULFATASE DEFICIENCY [J].
SCHMIDT, B ;
SELMER, T ;
INGENDOH, A ;
VONFIGURA, K .
CELL, 1995, 82 (02) :271-278
[29]   Pfam: multiple sequence alignments and HMM-profiles of protein domains [J].
Sonnhammer, ELL ;
Eddy, SR ;
Birney, E ;
Bateman, A ;
Durbin, R .
NUCLEIC ACIDS RESEARCH, 1998, 26 (01) :320-322
[30]   Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies [J].
Strimmer, K ;
vonHaeseler, A .
MOLECULAR BIOLOGY AND EVOLUTION, 1996, 13 (07) :964-969