Riboswitches as versatile gene control elements

被引:392
作者
Tucker, BJ
Breaker, RR
机构
[1] Yale Univ, Dept Mol Cellular & Dev Biol, New Haven, CT 06520 USA
[2] Yale Univ, Dept Mol Biophys & Biochem, New Haven, CT 06520 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
D O I
10.1016/j.sbi.2005.05.003
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Riboswitches are structured elements typically found in the 5' untranslated regions of mRNAs, where they regulate gene expression by binding to small metabolites. In all examples studied to date, these RNA control elements do not require the involvement of protein factors for metabolite binding. Riboswitches appear to be pervasive in eubacteria, suggesting that this form of regulation is an important mechanism by which metabolic genes are controlled. Recently discovered riboswitch classes have surprisingly complex mechanisms for regulating gene expression and new high-resolution structural models of these RNAs provide insight into the molecular details of metabolite recognition by natural RNA aptamers.
引用
收藏
页码:342 / 348
页数:7
相关论文
共 52 条
[1]  
[Anonymous], 1910, J. Physiol., DOI [DOI 10.1017/CBO9781107415324.004, DOI 10.1113/JPHYSIOL.1910.SP001386]
[2]   New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control [J].
Barrick, JE ;
Corbino, KA ;
Winkler, WC ;
Nahvi, A ;
Mandal, M ;
Collins, J ;
Lee, M ;
Roth, A ;
Sudarsan, N ;
Jona, I ;
Wickiser, JK ;
Breaker, RR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (17) :6421-6426
[3]   MicroRNAs: Genomics, biogenesis, mechanism, and function (Reprinted from Cell, vol 116, pg 281-297, 2004) [J].
Bartel, David P. .
CELL, 2007, 131 (04) :11-29
[4]   Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine [J].
Batey, RT ;
Gilbert, SD ;
Montange, RK .
NATURE, 2004, 432 (7015) :411-415
[5]   2.8 Å crystal structure of the malachite green aptamer [J].
Baugh, C ;
Grate, D ;
Wilson, C .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 301 (01) :117-128
[6]   Bacterial gene regulation: from transcription attenuation to riboswitches and ribozymes [J].
Brantl, S .
TRENDS IN MICROBIOLOGY, 2004, 12 (11) :473-475
[7]   Temperature-controlled structural alterations of an RNA thermometer [J].
Chowdhury, S ;
Ragaz, C ;
Kreuger, E ;
Narberhaus, F .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (48) :47915-47921
[8]   Xanthine metabolism in Bacillus subtilis: Characterization of the xpt-pbuX operon and evidence for purine- and nitrogen-controlled expression of genes involved in xanthine salvage and catabolism [J].
Christiansen, LC ;
Schou, S ;
Nygaard, P ;
Saxild, HH .
JOURNAL OF BACTERIOLOGY, 1997, 179 (08) :2540-2550
[9]   COOPERATIVE INTERACTIONS OF HEMOGLOBIN [J].
EDELSTEIN, SJ .
ANNUAL REVIEW OF BIOCHEMISTRY, 1975, 44 :209-232
[10]   INVITRO SELECTION OF RNA MOLECULES THAT BIND SPECIFIC LIGANDS [J].
ELLINGTON, AD ;
SZOSTAK, JW .
NATURE, 1990, 346 (6287) :818-822