Making it stick: convection, reaction and diffusion in surface-based biosensors

被引:766
作者
Squires, Todd M. [1 ]
Messinger, Robert J. [1 ]
Manalis, Scott R. [2 ,3 ]
机构
[1] Univ Calif Santa Barbara, Dept Chem Engn, Santa Barbara, CA 93106 USA
[2] MIT, Dept Biol, Cambridge, MA 02139 USA
[3] MIT, Dept Mech Engn, Cambridge, MA 02139 USA
关键词
D O I
10.1038/nbt1388
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The past decade has seen researchers develop and apply novel technologies for biomolecular detection, at times approaching hard limits imposed by physics and chemistry. In nearly all sensors, the transport of target molecules to the sensor can play as critical a role as the chemical reaction itself in governing binding kinetics, and ultimately performance. Yet rarely does an analysis of the interplay between diffusion, convection and reaction motivate experimental design or interpretation. Here we develop a physically intuitive and practical understanding of analyte transport for researchers who develop and employ biosensors based on surface capture. We explore the qualitatively distinct behaviors that result, develop rules of thumb to quickly determine how a given system will behave, and derive order-of-magnitude estimates for fundamental quantities of interest, such as fluxes, collection rates and equilibration times. We pay particular attention to collection limits for micro- and nanoscale sensors, and highlight unexplained discrepancies between reported values and theoretical limits.
引用
收藏
页码:417 / 426
页数:10
相关论文
共 46 条
[1]   HEAT-MASS TRANSFER TO A FINITE STRIP AT SMALL PECLET NUMBERS [J].
ACKERBERG, RC ;
PATEL, RD ;
GUPTA, SK .
JOURNAL OF FLUID MECHANICS, 1978, 86 (MAY) :49-65
[2]   Label-free, single-molecule detection with optical microcavities [J].
Armani, Andrea M. ;
Kulkarni, Rajan P. ;
Fraser, Scott E. ;
Flagan, Richard C. ;
Vahala, Kerry J. .
SCIENCE, 2007, 317 (5839) :783-787
[3]   Nearly instantaneous, cation-independent, high selectivity nucleic acid hybridization to DNA microarrays [J].
Belosludtsev, Y ;
Belosludtsev, I ;
Iverson, B ;
Lemeshko, S ;
Wiese, R ;
Hogan, M ;
Powdrill, T .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2001, 282 (05) :1263-1267
[4]  
Bender C.M., 1978, Advanced mathematical methods for scientists and engineers
[5]   Comparative modeling and analysis of microfluidic and conventional DNA microarrays [J].
Benn, JA ;
Hu, J ;
Hogan, BJ ;
Fry, RC ;
Samson, LD ;
Thorsen, T .
ANALYTICAL BIOCHEMISTRY, 2006, 348 (02) :284-293
[6]  
Berg H. C., 1984, Random Walks in Biology
[8]  
Bird R B., 2002, Transportphenomena
[9]   Quantitative real-time measurements of DNA hybridization with alkylated nonoxidized silicon nanowires in electrolyte solution [J].
Bunimovich, Yuri L. ;
Shin, Young Shik ;
Yeo, Woon-Seok ;
Amori, Michael ;
Kwong, Gabriel ;
Heath, James R. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (50) :16323-16331
[10]   Weighing of biomolecules, single cells and single nanoparticles in fluid [J].
Burg, Thomas P. ;
Godin, Michel ;
Knudsen, Scott M. ;
Shen, Wenjiang ;
Carlson, Greg ;
Foster, John S. ;
Babcock, Ken ;
Manalis, Scott R. .
NATURE, 2007, 446 (7139) :1066-1069