A new facile method for spin-labeling of oligonucleotides

被引:24
作者
Strube, T [1 ]
Schiemann, O [1 ]
MacMillan, F [1 ]
Prisner, T [1 ]
Engels, JW [1 ]
机构
[1] Univ Frankfurt, Inst Organ Chem, D-60439 Frankfurt, Germany
关键词
D O I
10.1081/NCN-100002534
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A new facile method for spin-labeling suitable for DNA and RNA oligonucleotides is presented. The nitroxide 3-ethenyl-2,2,5,5-tetramethyl-pyrrolin-1-yloxy was directly introduced during automated solid-phase synthesis by a Pd(0) cross coupling reaction. The main advantages of this procedure are the small amount of spin-label needed for the derivatisation of the oligonucleotide and the high coupling efficiency on the solid phase.
引用
收藏
页码:1271 / 1274
页数:4
相关论文
共 8 条
[1]   Synthesis of duplex DNA containing a spin labeled analog of 2'-deoxycytidine [J].
Fischhaber, PL ;
Reese, AW ;
Nguyen, T ;
Kirchner, JJ ;
Hustedt, EJ ;
Robinson, BH ;
Hopkins, PB .
NUCLEOSIDES & NUCLEOTIDES, 1997, 16 (04) :365-377
[2]   Mapping RNA-protein interactions in ribonuclease P from Escherichia coli using electron paramagnetic resonance spectroscopy [J].
Gopalan, V ;
Kühne, H ;
Biswas, R ;
Li, HM ;
Brudvig, GW ;
Altman, S .
BIOCHEMISTRY, 1999, 38 (06) :1705-1714
[3]   MOTIONS OF SHORT DNA DUPLEXES - AN ANALYSIS OF DNA DYNAMICS USING AN EPR-ACTIVE PROBE [J].
HUSTEDT, EJ ;
SPALTENSTEIN, A ;
KIRCHNER, JJ ;
HOPKINS, PB ;
ROBINSON, BH .
BIOCHEMISTRY, 1993, 32 (07) :1774-1787
[4]   Spin-labeled nucleotide mobility in the boundary of the EcoRI endonuclease binding site [J].
Keyes, RS ;
Cao, YY ;
Bobst, EV ;
Rosenberg, JM ;
Bobst, AM .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 1996, 14 (02) :163-172
[5]   Palladium(0)-catalyzed modification of oligonucleotides during automated solid-phase synthesis [J].
Khan, SI ;
Grinstaff, MW .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (19) :4704-4705
[6]   DETERMINATION OF THE DISTANCE BETWEEN 2 SPIN LABELS ATTACHED TO A MACROMOLECULE [J].
RABENSTEIN, MD ;
SHIN, YK .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (18) :8239-8243
[7]   DNA STRUCTURAL DATA FROM A DYNAMICS PROBE - THE DYNAMIC SIGNATURES OF SINGLE-STRANDED, HAIRPIN-LOOPED, AND DUPLEX FORMS OF DNA ARE DISTINGUISHABLE [J].
SPALTENSTEIN, A ;
ROBINSON, BH ;
HOPKINS, PB .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1989, 111 (06) :2303-2305
[8]   Interaction of a spin-labeled adenine-acridine conjugate with a DNA duplex containing an abasic site model [J].
Thomas, F ;
Michon, J ;
Lhomme, J .
BIOCHEMISTRY, 1999, 38 (06) :1930-1937