Probing microscopic origins of confined subdiffusion by first-passage observables

被引:179
作者
Condamin, S. [1 ]
Tejedor, V. [1 ]
Voituriez, R. [1 ]
Benichou, O. [1 ]
Klafter, J. [2 ]
机构
[1] Univ Paris 06, Unite Mixte Rech 7600, Phys Theor & Matiere Condensee, F-75255 Paris, France
[2] Tel Aviv Univ, Sch Chem, IL-69978 Tel Aviv, Israel
关键词
anomalous diffusion; cellular transport; reaction kinetics; random motion;
D O I
10.1073/pnas.0712158105
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Subdiffusive motion of tracer particles in complex crowded environments, such as biological cells, has been shown to be widespread. This deviation from Brownian motion is usually characterized by a sub-linear time dependence of the mean square displacement (MSD). However, subdiffusive behavior can stem from different microscopic scenarios that cannot be identified solely by the MSD data. In this article we present a theoretical framework that permits the analytical calculation of first-passage observables (mean first-passage times, splitting probabilities, and occupation times distributions) in disordered media in any dimensions. This analysis is applied to two representative microscopic models of subdiffusion: continuous-time random walks with heavy tailed waiting times and diffusion on fractals. Our results show that first-passage observables provide tools to unambiguously discriminate between the two possible microscopic scenarios of subdiffusion. Moreover, we suggest experiments based on first-passage observables that could help in determining the origin of subdiffusion in complex media, such as living cells, and discuss the implications of anomalous transport to reaction kinetics in cells.
引用
收藏
页码:5675 / 5680
页数:6
相关论文
共 54 条
[21]   Searching circular DNA strands [J].
Eliazar, Iddo ;
Koren, Tal ;
Klafter, Joseph .
JOURNAL OF PHYSICS-CONDENSED MATTER, 2007, 19 (06)
[22]   AUTOMATED DETECTION AND TRACKING OF INDIVIDUAL AND CLUSTERED CELL-SURFACE LOW-DENSITY-LIPOPROTEIN RECEPTOR MOLECULES [J].
GHOSH, RN ;
WEBB, WW .
BIOPHYSICAL JOURNAL, 1994, 66 (05) :1301-1318
[23]   Physical nature of bacterial cytoplasm [J].
Golding, I ;
Cox, EC .
PHYSICAL REVIEW LETTERS, 2006, 96 (09)
[24]   DIFFUSION IN DISORDERED MEDIA [J].
HAVLIN, S ;
BENAVRAHAM, D .
ADVANCES IN PHYSICS, 1987, 36 (06) :695-798
[25]  
Havlin S., 1991, Fractals and Disordered Systems, P97
[26]  
Hughes B. D., 1995, RANDOM WALKS RANDOM, V1
[27]   STOCHASTIC PATHWAY TO ANOMALOUS DIFFUSION [J].
KLAFTER, J ;
BLUMEN, A ;
SHLESINGER, MF .
PHYSICAL REVIEW A, 1987, 35 (07) :3081-3085
[28]   How gene order is influenced by the biophysics of transcription regulation [J].
Kolesov, Grigory ;
Wunderlich, Zeba ;
Laikova, Olga N. ;
Gelfand, Mikhail S. ;
Mirny, Leonid A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (35) :13948-13953
[29]   REACTION-KINETICS ON FRACTALS - RANDOM-WALKER SIMULATIONS AND EXCITON EXPERIMENTS [J].
KOPELMAN, R ;
KLYMKO, PW ;
NEWHOUSE, JS ;
ANACKER, LW .
PHYSICAL REVIEW B, 1984, 29 (06) :3747-3748
[30]   CONFINED LATERAL DIFFUSION OF MEMBRANE-RECEPTORS AS STUDIED BY SINGLE-PARTICLE TRACKING (NANOVID MICROSCOPY) - EFFECTS OF CALCIUM-INDUCED DIFFERENTIATION IN CULTURED EPITHELIAL-CELLS [J].
KUSUMI, A ;
SAKO, Y ;
YAMAMOTO, M .
BIOPHYSICAL JOURNAL, 1993, 65 (05) :2021-2040