Prospective Derivation of a Living Organoid Biobank of Colorectal Cancer Patients

被引:1997
作者
van de Wetering, Marc [1 ,2 ]
Francies, Hayley E. [3 ]
Francis, Joshua M. [4 ,5 ,6 ]
Bounova, Gergana [7 ]
Iorio, Francesco [8 ]
Pronk, Apollo [9 ]
van Houdt, Winan [9 ]
van Gorp, Joost [10 ]
Taylor-Weiner, Amaro [4 ,5 ]
Kester, Lennart [1 ]
McLaren-Douglas, Anne [3 ]
Blokker, Joyce [1 ,2 ]
Jaksani, Sridevi [1 ,2 ]
Bartfeld, Sina [1 ]
Volckman, Richard [11 ]
van Sluis, Peter [11 ]
Li, Vivian S. W. [12 ]
Seepo, Sara [4 ,5 ]
Pedamallu, Chandra Sekhar [4 ,5 ,6 ]
Cibulskis, Kristian [4 ,5 ]
Carter, Scott L. [4 ,5 ,6 ]
McKenna, Aaron [4 ,5 ]
Lawrence, Michael S. [4 ,5 ]
Lichtenstein, Lee [4 ,5 ]
Stewart, Chip [5 ]
Koster, Jan [11 ]
Versteeg, Rogier [11 ]
van Oudenaarden, Alexander [1 ]
Saez-Rodriguez, Julio [8 ]
Vries, Robert G. J. [1 ,2 ]
Getz, Gad [4 ,5 ,6 ]
Wessels, Lodewyk [7 ]
Stratton, Michael R. [3 ]
McDermott, Ultan [3 ]
Meyerson, Matthew [4 ,5 ,6 ]
Garnett, Mathew J. [3 ]
Clevers, Hans [1 ,2 ]
机构
[1] Canc Genom & Univ Med Ctr, Royal Netherlands Acad Arts & Sci KNAW, Hubrecht Inst, NL-3584 CT Utrecht, Netherlands
[2] Fdn Hubrecht Organoid Technol HUB, NL-3584 CT Utrecht, Netherlands
[3] Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England
[4] MIT, Broad Inst, Cambridge, MA 02142 USA
[5] Harvard Univ, Cambridge, MA 02142 USA
[6] Dana Farber Canc Inst, Dept Med Oncol, Boston, MA 02115 USA
[7] Netherlands Canc Inst, Computat Canc Biol, NL-1066 CX Amsterdam, Netherlands
[8] European Bioinformat Inst, European Mol Biol, Cambridge CB10 1SA, England
[9] Diakonessen Hosp, Dept Surg, NL-3582 KE Utrecht, Netherlands
[10] Diakonessen Hosp, Dept Pathol, NL-3582 KE Utrecht, Netherlands
[11] Univ Amsterdam, Acad Med Ctr, Dept Oncogenom, NL-1105 AZ Amsterdam, Netherlands
[12] MRC Natl Inst Med Res, Div Stem Cell Biol & Dev Genet, London NW7 1AA, England
关键词
SMALL-INTESTINE; DRUG-SENSITIVITY; WNT RECEPTORS; COLON-CANCER; STEM-CELLS; GENE; LGR5; EPITHELIUM; MUTATIONS; GENOME;
D O I
10.1016/j.cell.2015.03.053
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
In Rspondin-based 3D cultures, Lgr5 stem cells from multiple organs form ever-expanding epithelial organoids that retain their tissue identity. We report the establishment of tumor organoid cultures from 20 consecutive colorectal carcinoma (CRC) patients. For most, organoids were also generated from adjacent normal tissue. Organoids closely recapitulate several properties of the original tumor. The spectrum of genetic changes within the "living biobank'' agrees well with previous large-scale mutational analyses of CRC. Gene expression analysis indicates that the major CRC molecular subtypes are represented. Tumor organoids are amenable to high-throughput drug screens allowing detection of gene-drug associations. As an example, a single organoid culture was exquisitely sensitive to Wnt secretion (porcupine) inhibitors and carried a mutation in the negative Wnt feedback regulator RNF43, rather than in APC. Organoid technology may fill the gap between cancer genetics and patient trials, complement cell-line- and xenograft-based drug studies, and allow personalized therapy design.
引用
收藏
页码:933 / 945
页数:13
相关论文
共 54 条
[1]
Identification of stem cells in small intestine and colon by marker gene Lgr5 [J].
Barker, Nick ;
van Es, Johan H. ;
Kuipers, Jeroen ;
Kujala, Pekka ;
van den Born, Maaike ;
Cozijnsen, Miranda ;
Haegebarth, Andrea ;
Korving, Jeroen ;
Begthel, Harry ;
Peters, Peter J. ;
Clevers, Hans .
NATURE, 2007, 449 (7165) :1003-U1
[2]
The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity [J].
Barretina, Jordi ;
Caponigro, Giordano ;
Stransky, Nicolas ;
Venkatesan, Kavitha ;
Margolin, Adam A. ;
Kim, Sungjoon ;
Wilson, Christopher J. ;
Lehar, Joseph ;
Kryukov, Gregory V. ;
Sonkin, Dmitriy ;
Reddy, Anupama ;
Liu, Manway ;
Murray, Lauren ;
Berger, Michael F. ;
Monahan, John E. ;
Morais, Paula ;
Meltzer, Jodi ;
Korejwa, Adam ;
Jane-Valbuena, Judit ;
Mapa, Felipa A. ;
Thibault, Joseph ;
Bric-Furlong, Eva ;
Raman, Pichai ;
Shipway, Aaron ;
Engels, Ingo H. ;
Cheng, Jill ;
Yu, Guoying K. ;
Yu, Jianjun ;
Aspesi, Peter, Jr. ;
de Silva, Melanie ;
Jagtap, Kalpana ;
Jones, Michael D. ;
Wang, Li ;
Hatton, Charles ;
Palescandolo, Emanuele ;
Gupta, Supriya ;
Mahan, Scott ;
Sougnez, Carrie ;
Onofrio, Robert C. ;
Liefeld, Ted ;
MacConaill, Laura ;
Winckler, Wendy ;
Reich, Michael ;
Li, Nanxin ;
Mesirov, Jill P. ;
Gabriel, Stacey B. ;
Getz, Gad ;
Ardlie, Kristin ;
Chan, Vivien ;
Myer, Vic E. .
NATURE, 2012, 483 (7391) :603-607
[3]
Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion [J].
Bass, Adam J. ;
Lawrence, Michael S. ;
Brace, Lear E. ;
Ramos, Alex H. ;
Drier, Yotam ;
Cibulskis, Kristian ;
Sougnez, Carrie ;
Voet, Douglas ;
Saksena, Gordon ;
Sivachenko, Andrey ;
Jing, Rui ;
Parkin, Melissa ;
Pugh, Trevor ;
Verhaak, Roel G. ;
Stransky, Nicolas ;
Boutin, Adam T. ;
Barretina, Jordi ;
Solit, David B. ;
Vakiani, Evi ;
Shao, Wenlin ;
Mishina, Yuji ;
Warmuth, Markus ;
Jimenez, Jose ;
Chiang, Derek Y. ;
Signoretti, Sabina ;
Kaelin, William G., Jr. ;
Spardy, Nicole ;
Hahn, William C. ;
Hoshida, Yujin ;
Ogino, Shuji ;
DePinho, Ronald A. ;
Chin, Lynda ;
Garraway, Levi A. ;
Fuchs, Charles S. ;
Baselga, Jose ;
Tabernero, Josep ;
Gabriel, Stacey ;
Lander, Eric S. ;
Getz, Gad ;
Meyerson, Matthew .
NATURE GENETICS, 2011, 43 (10) :964-U67
[4]
Boland CR, 2010, GASTROENTEROLOGY, V138, P2073, DOI [10.1053/j.gastro.2009.12.064, 10.1053/j.gastro.2010.04.024]
[5]
The causes and consequences of genetic heterogeneity in cancer evolution [J].
Burrell, Rebecca A. ;
McGranahan, Nicholas ;
Bartek, Jiri ;
Swanton, Charles .
NATURE, 2013, 501 (7467) :338-345
[6]
R-spondins function as ligands of the orphan receptors LGR4 and LGR5 to regulate Wnt/β-catenin signaling [J].
Carmon, Kendra S. ;
Gong, Xing ;
Lin, Qiushi ;
Thomas, Anthony ;
Liu, Qingyun .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (28) :11452-11457
[7]
Absolute quantification of somatic DNA alterations in human cancer [J].
Carter, Scott L. ;
Cibulskis, Kristian ;
Helman, Elena ;
McKenna, Aaron ;
Shen, Hui ;
Zack, Travis ;
Laird, Peter W. ;
Onofrio, Robert C. ;
Winckler, Wendy ;
Weir, Barbara A. ;
Beroukhim, Rameen ;
Pellman, David ;
Levine, Douglas A. ;
Lander, Eric S. ;
Meyerson, Matthew ;
Getz, Gad .
NATURE BIOTECHNOLOGY, 2012, 30 (05) :413-+
[8]
Ex vivo culture of human prostate tissue and drug development [J].
Centenera, Margaret M. ;
Raj, Ganesh V. ;
Knudsen, Karen E. ;
Tilley, Wayne D. ;
Butler, Lisa M. .
NATURE REVIEWS UROLOGY, 2013, 10 (08) :483-487
[9]
Small molecule-mediated disruption of Wnt-dependent signaling in tissue regeneration and cancer [J].
Chen, Baozhi ;
Dodge, Michael E. ;
Tang, Wei ;
Lu, Jianming ;
Ma, Zhiqiang ;
Fan, Chih-Wei ;
Wei, Shuguang ;
Hao, Wayne ;
Kilgore, Jessica ;
Williams, Noelle S. ;
Roth, Michael G. ;
Amatruda, James F. ;
Chen, Chuo ;
Lum, Lawrence .
NATURE CHEMICAL BIOLOGY, 2009, 5 (02) :100-107
[10]
Chiang DY, 2009, NAT METHODS, V6, P99, DOI [10.1038/nmeth.1276, 10.1038/NMETH.1276]