Noisy Levy walk analog of two-dimensional DNA walks for chromosomes of S-cerevisiae

被引:8
作者
Abramson, G
Alemany, PA
Cerdeira, HA
机构
[1] Int Ctr Theoret Phys, I-34100 Trieste, Italy
[2] Theoret Polymerphys, D-79104 Freiburg, Germany
来源
PHYSICAL REVIEW E | 1998年 / 58卷 / 01期
关键词
D O I
10.1103/PhysRevE.58.914
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
The DNA sequences of all the chromosomes of Saccharomyces cerevisiae are mapped onto a d = 2 space. The resulting patterns are interpreted as a two-dimensional walk. Their mean square displacement shows a superdiffusive behavior. We address the question if this behavior can be understood in terms of a random walk model. We found that it can be modeled as a superposition of a Levy walk and white noise.
引用
收藏
页码:914 / 918
页数:5
相关论文
共 19 条
[1]   Possible connection of the generalized thermostatistics with a scale invariant statistical thermodynamics [J].
Alemany, PA .
PHYSICS LETTERS A, 1997, 235 (05) :452-456
[2]   FRACTAL RANDOM-WALKS FROM A VARIATIONAL FORMALISM FOR TSALLIS ENTROPIES [J].
ALEMANY, PA ;
ZANETTE, DH .
PHYSICAL REVIEW E, 1994, 49 (02) :R956-R958
[3]   DYNAMICAL MODEL FOR DNA-SEQUENCES [J].
ALLEGRINI, P ;
BARBI, M ;
GRIGOLINI, P ;
WEST, BJ .
PHYSICAL REVIEW E, 1995, 52 (05) :5281-5296
[4]   A dynamical approach to DNA sequences [J].
Allegrini, P ;
Grigolini, P ;
West, BJ .
PHYSICS LETTERS A, 1996, 211 (04) :217-222
[5]   GenBank [J].
Benson, DA ;
Boguski, M ;
Lipman, DJ ;
Ostell, J .
NUCLEIC ACIDS RESEARCH, 1996, 24 (01) :1-5
[6]   A STOCHASTIC APPROACH TO ENHANCED DIFFUSION - LEVY WALKS [J].
BLUMEN, A ;
KLAFTER, J ;
ZUMOFEN, G .
EUROPHYSICS LETTERS, 1990, 13 (03) :223-229
[7]   TRANSPORT ASPECTS IN ANOMALOUS DIFFUSION - LEVY WALKS [J].
BLUMEN, A ;
ZUMOFEN, G ;
KLAFTER, J .
PHYSICAL REVIEW A, 1989, 40 (07) :3964-3974
[8]  
GEISEL T, 1985, PHYS REV LETT, V54, P616, DOI 10.1103/PhysRevLett.54.616
[9]   Beyond Brownian motion [J].
Klafter, J ;
Shlesinger, MF ;
Zumofen, G .
PHYSICS TODAY, 1996, 49 (02) :33-39
[10]  
MONTROLL E, 1979, FLUCTUATION PHENOMEN