Crystal structure of a ternary complex of the alcohol dehydrogenase from Sulfolobus solfataricus

被引:39
作者
Esposito, L
Bruno, F
Sica, F
Raia, CA
Giordano, A
Rossi, M
Mazzarella, L
Zagari, A
机构
[1] CNR, Ist Biostrutture & Bioimmagini, I-80134 Naples, Italy
[2] Univ Naples Federico II, Dipartimento Chim, I-80126 Naples, Italy
[3] CNR, Ist Biochim Prot, I-80125 Naples, Italy
[4] Univ Naples Federico II, Dipartimento Chim Biol, I-80134 Naples, Italy
关键词
D O I
10.1021/bi035271b
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The crystal structure of a ternary complex of the alcohol dehydrogenase from the archaeon Sulfolobus solfataricus (SsADH) has been determined at 2.3 Angstrom. The asymmetric unit contains a dimer with a NADH and a 2-ethoxyethanol molecule bound to each subunit. The comparison with the apo structure of the enzyme reveals that this medium chain ADH undergoes a substantial conformational change in the apo-holo transition, accompanied by loop movements at the domain interface. The extent of domain closure is similar to that observed for the classical horse liver ADH, although some differences are found which can be related to the different oligomeric states of the enzymes. Compared to its apo form. the SsADH ternary complex shows a change in the ligation state of the active site zinc ion which is no longer bound to Glu69, providing additional evidence of the dynamic role played by the conserved glutamate residue in ADHs. In addition, the structure presented here allows the identification of the substrate site and hence of the residues that are important in the binding of both the substrate and the coenzyme.
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页码:14397 / 14407
页数:11
相关论文
共 48 条
[11]  
Eklund H., 1987, BIOL MACROMOL ASSEM, V3, P73
[12]   Further additions to MolScript version 1.4, including reading and contouring of electron-density maps [J].
Esnouf, RM .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1999, 55 :938-940
[13]   Structural study of a single-point mutant of Sulfolobus solfataricus alcohol dehydrogenase with enhanced activity [J].
Esposito, L ;
Bruno, I ;
Sica, F ;
Raia, CA ;
Giordano, A ;
Rossi, M ;
Mazzarella, L ;
Zagari, A .
FEBS LETTERS, 2003, 539 (1-3) :14-18
[14]   Crystal structure of the alcohol dehydrogenase from the hyperthermophilic archaeon Sulfolobus solfataricus at 1.85 Å resolution [J].
Esposito, L ;
Sica, F ;
Raia, CA ;
Giordano, A ;
Rossi, M ;
Mazzarella, L ;
Zagari, A .
JOURNAL OF MOLECULAR BIOLOGY, 2002, 318 (02) :463-477
[15]  
GANZHORN AJ, 1988, J BIOL CHEM, V263, P5446
[16]   The structure of an alcohol dehydrogenase from the hyperthermophilic archaeon Aeropyrum pernix [J].
Guy, JE ;
Isupov, MN ;
Littlechild, JA .
JOURNAL OF MOLECULAR BIOLOGY, 2003, 331 (05) :1041-1051
[17]   Crystallization and preliminary X-ray diffraction studies of a novel alcohol dehydrogenase from the hyperthermophilic archaeon Aeropyrum pernix [J].
Guy, JE ;
Isupov, MN ;
Littlechild, JA .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2003, 59 :174-176
[18]   Crystal structure of sorbitol dehydrogenase [J].
Johansson, K ;
El-Ahmad, M ;
Kaiser, C ;
Jörnvall, H ;
Eklund, H ;
Höög, JO ;
Ramaswamy, S .
CHEMICO-BIOLOGICAL INTERACTIONS, 2001, 130 (1-3) :351-358
[19]   IMPROVED METHODS FOR BUILDING PROTEIN MODELS IN ELECTRON-DENSITY MAPS AND THE LOCATION OF ERRORS IN THESE MODELS [J].
JONES, TA ;
ZOU, JY ;
COWAN, SW ;
KJELDGAARD, M .
ACTA CRYSTALLOGRAPHICA SECTION A, 1991, 47 :110-119
[20]   Tetrameric NAD-dependent alcohol dehydrogenase [J].
Karlsson, A ;
El-Ahmad, M ;
Johansson, K ;
Shafqat, J ;
Jörnvall, H ;
Eklund, H ;
Ramaswamy, S .
CHEMICO-BIOLOGICAL INTERACTIONS, 2003, 143 :239-245