Completing the sequence of the Sulfolobus solfataricus P2 genome

被引:47
作者
Sensen, CW
Charlebois, RL
Chow, C
Clausen, IG
Curtis, B
Doolittle, WF
Duguet, M
Erauso, G
Gaasterland, T
Garrett, RA
Gordon, P
de Jong, IH
Jeffries, AC
Kozera, C
Medina, N
De Moors, A
van der Oost, J
Phan, H
Ragan, MA
Schenk, MF
She, QX
Singh, RK
Tolstrup, N
机构
[1] Natl Res Council Canada, Inst Marine Biosci, Halifax, NS B3H 3Z1, Canada
[2] Univ Ottawa, Dept Biol, Ottawa, ON K1N 6N5, Canada
[3] Dalhousie Univ, Dept Biochem, Sch Med, Halifax, NS B3H 4H7, Canada
[4] Novo Nordisk AS, Screening Biotechnol Enzyme Res, DK-2880 Bagsvaerd, Denmark
[5] Universite Paris Sud, Inst Genet & Microbiol, Lab Enzymol Acides Nucl, FR-91405 Orsay, France
[6] Univ Copenhagen, Inst Mol Biol, DK-1307 Copenhagen K, Denmark
[7] Univ Chicago, Dept Comp Sci, Chicago, IL 60637 USA
[8] Argonne Natl Lab, Div Math & Comp Sci, Argonne, IL 60439 USA
[9] Wageningen Univ Agr, Microbiol Lab, NL-6703 CT Wageningen, Netherlands
基金
加拿大自然科学与工程研究理事会;
关键词
Sulfolobus solfataricus; archaea; genomic sequence; MAGPIE;
D O I
10.1007/s007920050073
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The Sulfolobus solfataricus P2 genome collaborators are poised to sequence the entire 3-Mbp genome of this crenarchaeote archaeon, About 80% of the genome has been sequenced to date, with the rest of the sequence being assembled fast. In this publication we introduce the genomic sequencing and automated analysis strategy and present intial data derived from the sequence analysis. After an overview of the general sequence features, metabolic pathway studies are explained, using sugar metabolism as an example, The paper closes with an overview of repetitive elements in S. solfataricus.
引用
收藏
页码:305 / 312
页数:8
相关论文
共 30 条
[1]  
Aagaard C, 1996, FEMS MICROBIOL REV, V18, P93
[2]   Shuttle vectors for hyperthermophilic archaea [J].
Aravalli, RN ;
Garrett, RA .
EXTREMOPHILES, 1997, 1 (04) :183-191
[3]  
BABA N, 1994, OSA PROC, V21, P60
[4]   A new DNA sequence assembly program [J].
Bonfield, JK ;
Smith, KF ;
Staden, R .
NUCLEIC ACIDS RESEARCH, 1995, 23 (24) :4992-4999
[5]   Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii [J].
Bult, CJ ;
White, O ;
Olsen, GJ ;
Zhou, LX ;
Fleischmann, RD ;
Sutton, GG ;
Blake, JA ;
FitzGerald, LM ;
Clayton, RA ;
Gocayne, JD ;
Kerlavage, AR ;
Dougherty, BA ;
Tomb, JF ;
Adams, MD ;
Reich, CI ;
Overbeek, R ;
Kirkness, EF ;
Weinstock, KG ;
Merrick, JM ;
Glodek, A ;
Scott, JL ;
Geoghagen, NSM ;
Weidman, JF ;
Fuhrmann, JL ;
Nguyen, D ;
Utterback, TR ;
Kelley, JM ;
Peterson, JD ;
Sadow, PW ;
Hanna, MC ;
Cotton, MD ;
Roberts, KM ;
Hurst, MA ;
Kaine, BP ;
Borodovsky, M ;
Klenk, HP ;
Fraser, CM ;
Smith, HO ;
Woese, CR ;
Venter, JC .
SCIENCE, 1996, 273 (5278) :1058-1073
[6]  
CANNIO R, 1996, 1 INT C EXTR EST POR, P35
[7]   DETAILED PHYSICAL MAP AND SET OF OVERLAPPING CLONES COVERING THE GENOME OF THE ARCHAEBACTERIUM HALOFERAX-VOLCANII DS2 [J].
CHARLEBOIS, RL ;
SCHALKWYK, LC ;
HOFMAN, JD ;
DOOLITTLE, WF .
JOURNAL OF MOLECULAR BIOLOGY, 1991, 222 (03) :509-524
[8]   The Sulfolobus solfataricus P2 genome project [J].
Charlebois, RL ;
Gaasterland, T ;
Ragan, MA ;
Doolittle, WF ;
Sensen, CW .
FEBS LETTERS, 1996, 389 (01) :88-91
[9]   Evolutionary analysis of the hisCGAB(d)FDEHI gene cluster from the Archaeon Sulfolobus solfataricus P2 [J].
Charlebois, RL ;
Sensen, CW ;
Doolittle, WF ;
Brown, JR .
JOURNAL OF BACTERIOLOGY, 1997, 179 (13) :4429-4432
[10]   GLUCOSE-METABOLISM IN THE EXTREME THERMOACIDOPHILIC ARCHAEBACTERIUM SULFOLOBUS-SOLFATARICUS [J].
DEROSA, M ;
GAMBACORTA, A ;
NICOLAUS, B ;
GIARDINA, P ;
POERIO, E ;
BUONOCORE, V .
BIOCHEMICAL JOURNAL, 1984, 224 (02) :407-414