Amino acid biosynthesis: New architectures in allosteric enzymes

被引:48
作者
Curien, Gilles [1 ]
Biou, Valerie [2 ]
Mas-Droux, Corine [1 ]
Robert-Genthon, Mylene [1 ]
Ferrer, Jean-Luc [3 ]
Dumas, Renaud [1 ]
机构
[1] Univ Grenoble 1, Inst Rech & Technol Sci Vivant, Inst Natl Rech Agron,CEA, Lab Physiol Cellulaire Vegetale,CNRS, F-38054 Grenoble, France
[2] CNRS, Lab Enzymol & Biochim Struct, F-91198 Gif Sur Yvette, France
[3] Univ Grenoble 1, CNRS, CEA,Inst Biol Struct JP Ebel, Lab Cristallogenese & Cristallog Prot, F-38027 Grenoble, France
关键词
ACT domain; acetohydroxyacid synthase; allosteric control; allostery; amino acid; aspartate kinase; metabolism; dihydrodipicolinate synthase; enzyme; homoserine dehydrogenase; isopropylmalate synthase; plant structural biology; S-adenosylmethionine; threonine deaminase; threonine synthase;
D O I
10.1016/j.plaphy.2007.12.006
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
This review focuses on the allosteric controls in the Aspartate-derived and the branched-chain amino acid biosynthetic pathways examined both from kinetic and structural points of view. The objective is to show the differences that exist among the plant and microbial worlds concerning the allosteric regulation of these pathways and to unveil the structural bases of this diversity. Indeed, crystallographic structures of enzymes from these pathways have been determined in bacteria, fungi and plants, providing a wonderful opportunity to obtain insight into the acquisition and modulation of allosteric controls in the course of evolution. This will be examined using two enzymes, threonine synthase and the ACT domain containing enzyme aspartate kinase. In a last part, as many enzymes in these pathways display regulatory domains containing the conserved ACT module, the organization of ACT domains in this kind of allosteric enzymes will be reviewed, providing explanations for the variety of allosteric effectors and type of controls observed. (c) 2007 Elsevier Masson SAS. All fights reserved.
引用
收藏
页码:325 / 339
页数:15
相关论文
共 92 条
[21]   Kinetic and chemical mechanism of α-isopropylmalate synthase from Mycobacterium tuberculosis [J].
de Carvalho, Luiz Pedro S. ;
Blanchard, John S. .
BIOCHEMISTRY, 2006, 45 (29) :8988-8999
[22]   Two Arabidopsis genes (IPMS1 and IPMS2) encode isopropylmalate synthase, the branchpoint step in the biosynthesis of leucine [J].
de Kraker, Jan-Willem ;
Luck, Katrin ;
Textor, Susanne ;
Tokuhisa, James G. ;
Gershenzon, Jonathan .
PLANT PHYSIOLOGY, 2007, 143 (02) :970-986
[23]  
DeLaBarre B, 2000, NAT STRUCT BIOL, V7, P238
[24]   PURIFICATION AND CHARACTERIZATION OF DIHYDRODIPICOLINATE SYNTHASE FROM PEA [J].
DEREPPE, C ;
BOLD, G ;
GHISALBA, O ;
EBERT, E ;
SCHAR, HP .
PLANT PHYSIOLOGY, 1992, 98 (03) :813-821
[25]   Role of arginine 138 in the catalysis and regulation of Escherichia coli dihydrodipicolinate synthase [J].
Dobson, RCJ ;
Devenish, SRA ;
Turner, LA ;
Clifford, VR ;
Pearce, FG ;
Jameson, GB ;
Gerrard, JA .
BIOCHEMISTRY, 2005, 44 (39) :13007-13013
[26]   The crystal structures of native and (S)-lysine-bound dihydrodipicolinate synthase from Escherichia coli with improved resolution show new features of biological significance [J].
Dobson, RCJ ;
Griffin, MDW ;
Jameson, GB ;
Gerrard, JA .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2005, 61 :1116-1124
[27]   The initial step in the archaeal aspartate biosynthetic pathway catalyzed by a monofunctional aspartokinase [J].
Faehnle, Christopher R. ;
Liu, Xuying ;
Pavlovsky, Alexander ;
Viola, Ronald E. .
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2006, 62 :962-966
[28]   ISOLATION AND CHARACTERIZATION OF DIHYDRODIPICOLINATE SYNTHASE FROM MAIZE [J].
FRISCH, DA ;
GENGENBACH, BG ;
TOMMEY, AM ;
SELLNER, JM ;
SOMERS, DA ;
MYERS, DE .
PLANT PHYSIOLOGY, 1991, 96 (02) :444-452
[29]   Structure and control of pyridoxal phosphate dependent allosteric threonine deaminase [J].
Gallagher, DT ;
Gilliland, GL ;
Xiao, GY ;
Zondlo, J ;
Fisher, KE ;
Chinchilla, D ;
Eisenstein, E .
STRUCTURE, 1998, 6 (04) :465-475
[30]   Structure and function of threonine synthase from yeast [J].
Garrido-Franco, M ;
Ehlert, S ;
Messerschmidt, A ;
Marinkovic, S ;
Huber, R ;
Laber, B ;
Bourenkov, GP ;
Clausen, T .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (14) :12396-12405