Detecting single base substitutions, mismatches and bulges in DNA by temperature gradient gel electrophoresis and related methods

被引:35
作者
Wartell, RM [1 ]
Hosseini, S [1 ]
Powell, S [1 ]
Zhu, J [1 ]
机构
[1] Georgia Inst Technol, Sch Biol, Atlanta, GA 30332 USA
关键词
reviews; temperature gradients; DNA;
D O I
10.1016/S0021-9673(98)00149-6
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Temperature gradient gel electrophoresis (TGGE) and related methods can separate DNA fragments that differ by a single base pair or defect. This article describes the basic features of TGGE, and reviews the theoretical model of DNA unwinding and its ability to predict DNA mobility in a temperature gradient gel. Recent applications of TGGE and related methods that were directed at detecting point mutations, and evaluating the effects of single site defects are also reported. (C) 1998 Elsevier Science B.V.
引用
收藏
页码:169 / 185
页数:17
相关论文
共 64 条
[1]  
ABRAMS ES, 1992, METHOD ENZYMOL, V212, P71
[2]   INTRAMOLECULAR DNA MELTING BETWEEN STABLE HELICAL SEGMENTS - MELTING THEORY AND METASTABLE STATES [J].
ABRAMS, ES ;
MURDAUGH, SE ;
LERMAN, LS .
NUCLEIC ACIDS RESEARCH, 1995, 23 (14) :2775-2783
[3]  
ABRAMS ES, 1990, GENOMICS, V7, P163
[4]   MUTATION HETEROGENEITY OF CYSTIC-FIBROSIS IN FRANCE - SCREENING BY DENATURING GRADIENT GEL-ELECTROPHORESIS USING PSORALEN-MODIFIED OLIGONUCLEOTIDE [J].
BIENVENU, T ;
CAZENEUVE, C ;
KAPLAN, JC ;
BELDJORD, C .
HUMAN MUTATION, 1995, 6 (01) :23-29
[5]   Thermodynamic effects of formamide on DNA stability [J].
Blake, RD ;
Delcourt, SG .
NUCLEIC ACIDS RESEARCH, 1996, 24 (11) :2095-2103
[6]   CONSTANT DENATURANT GEL-ELECTROPHORESIS AS A RAPID SCREENING TECHNIQUE FOR P53 MUTATIONS [J].
BORRESEN, AL ;
HOVIG, E ;
SMITHSORENSEN, B ;
MALKIN, D ;
LYSTAD, S ;
ANDERSEN, TI ;
NESLAND, JM ;
ISSELBACHER, KJ ;
FRIEND, SH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1991, 88 (19) :8405-8409
[7]   SOMATIC MUTATIONS IN THE HMSH2 GENE IN MICROSATELLITE UNSTABLE COLORECTAL CARCINOMAS [J].
BORRESEN, AL ;
LOTHE, RA ;
MELING, GI ;
LYSTAD, S ;
MORRISON, P ;
LIPFORD, J ;
KANE, MF ;
ROGNUM, TO ;
KOLODNER, RD .
HUMAN MOLECULAR GENETICS, 1995, 4 (11) :2065-2072
[8]   A PROGRAM FOR SELECTING DNA FRAGMENTS TO DETECT MUTATIONS BY DENATURING GEL-ELECTROPHORESIS METHODS [J].
BROSSETTE, S ;
WARTELL, RM .
NUCLEIC ACIDS RESEARCH, 1994, 22 (20) :4321-4325
[9]   OUTGROUP HETERODUPLEX ANALYSIS USING TEMPERATURE-GRADIENT GEL-ELECTROPHORESIS - HIGH-RESOLUTION, LARGE-SCALE, SCREENING OF DNA VARIATION IN THE MITOCHONDRIAL CONTROL REGION [J].
CAMPBELL, NJH ;
HARRISS, FC ;
ELPHINSTONE, MS ;
BAVERSTOCK, PR .
MOLECULAR ECOLOGY, 1995, 4 (04) :407-418
[10]   FREQUENT MUTATIONS IN THE P53 TUMOR SUPPRESSOR GENE IN HUMAN LEUKEMIA T-CELL LINES [J].
CHENG, J ;
HAAS, M .
MOLECULAR AND CELLULAR BIOLOGY, 1990, 10 (10) :5502-5509