Proteome analysis: Biological assay or data archive?

被引:123
作者
Haynes, PA [1 ]
Gygi, SP [1 ]
Figeys, D [1 ]
Aebersold, R [1 ]
机构
[1] Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA
关键词
proteome; two-dimensional polyacrylamide gel electrophoresis; tandem mass spectrometry;
D O I
10.1002/elps.1150191104
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
In this review we examine the current state of proteome analysis. There are three main issues discussed: why it is necessary to study proteomes; how proteomes can be analyzed with current technology; and how proteome analysis can be used to enhance biological research. We conclude that proteome analysis is an essential tool in the understanding of regulated biological systems. Current technology, while still mostly limited to the more abundant proteins, enables the use of proteome analysis both to establish databases of proteins present, and to perform biological assays involving measurement of multiple variables. We believe that the utility of proteome analysis in future biological research will continue to be enhanced by further improvements in analytical technology.
引用
收藏
页码:1862 / 1871
页数:10
相关论文
共 50 条
  • [1] INTERNAL AMINO-ACID SEQUENCE-ANALYSIS OF PROTEINS SEPARATED BY ONE-DIMENSIONAL OR TWO-DIMENSIONAL GEL-ELECTROPHORESIS AFTER INSITU PROTEASE DIGESTION ON NITROCELLULOSE
    AEBERSOLD, RH
    LEAVITT, J
    SAAVEDRA, RA
    HOOD, LE
    KENT, SBH
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1987, 84 (20) : 6970 - 6974
  • [2] AEBERSOLD RH, 1986, J BIOL CHEM, V261, P4229
  • [3] SWISS-2DPAGE - A DATABASE OF 2-DIMENSIONAL GEL-ELECTROPHORESIS IMAGES
    APPEL, RD
    SANCHEZ, JC
    BAIROCH, A
    GOLAZ, O
    MIU, M
    VARGAS, JR
    HOCHSTRASSER, DF
    [J]. ELECTROPHORESIS, 1993, 14 (11) : 1232 - 1238
  • [4] Human 2-D PAGE databases for proteome analysis in health and disease: http://biobase.dk/cgi-bin/celis
    Celis, JE
    Gromov, P
    Ostergaard, M
    Madsen, P
    Honore, B
    Dejgaard, K
    Olsen, E
    Vorum, H
    Kristensen, DB
    Gromova, I
    Haunso, A
    VanDamme, J
    Puype, M
    Vandekerckhove, J
    Rasmussen, HH
    [J]. FEBS LETTERS, 1996, 398 (2-3): : 129 - 134
  • [5] Proteome analysis of Spiroplasma melliferum (A56) and protein characterisation across species boundaries
    Cordwell, SJ
    Basseal, DJ
    HumpherySmith, I
    [J]. ELECTROPHORESIS, 1997, 18 (08) : 1335 - 1346
  • [6] Characterization of human serum amyloid A protein isoforms separated by two-dimensional electrophoresis by liquid chromatography electrospray ionization tandem mass spectrometry
    Ducret, A
    Bruun, CF
    Bures, EJ
    Marhaug, G
    Husby, G
    Aebersold, R
    [J]. ELECTROPHORESIS, 1996, 17 (05) : 866 - 876
  • [7] High throughput protein characterization by automated reverse-phase chromatography electrospray tandem mass spectrometry
    Ducret, A
    Van Oostveen, I
    Eng, JK
    Yates, JR
    Aebersold, R
    [J]. PROTEIN SCIENCE, 1998, 7 (03) : 706 - 719
  • [8] AN APPROACH TO CORRELATE TANDEM MASS-SPECTRAL DATA OF PEPTIDES WITH AMINO-ACID-SEQUENCES IN A PROTEIN DATABASE
    ENG, JK
    MCCORMACK, AL
    YATES, JR
    [J]. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 1994, 5 (11) : 976 - 989
  • [9] Protein identification by capillary zone electrophoresis/microelectrospray ionization-tandem mass spectrometry at the subfemtomole level
    Figeys, D
    vanOostveen, I
    Ducret, A
    Aebersold, R
    [J]. ANALYTICAL CHEMISTRY, 1996, 68 (11) : 1822 - 1828
  • [10] High sensitivity identification of proteins by electrospray ionization tandem mass spectrometry: Initial comparison between an ion trap mass spectrometer and a triple quadrupole mass spectrometer
    Figeys, D
    Aebersold, R
    [J]. ELECTROPHORESIS, 1997, 18 (3-4) : 360 - 368