Chromatin states in pluripotent, differentiated, and reprogrammed cells

被引:127
作者
Fisher, Cynthia L. [1 ]
Fisher, Amanda G. [1 ]
机构
[1] Univ London Imperial Coll Sci Technol & Med, Sch Med, MRC Clin Sci Ctr, Lymphocyte Dev Grp, London W12 0NN, England
基金
英国医学研究理事会;
关键词
EMBRYONIC STEM-CELLS; TRANSCRIPTIONAL REGULATORY CIRCUITRY; RNA-POLYMERASE-II; SELF-RENEWAL; DNA METHYLATION; INTERACTION NETWORK; LINEAGE COMMITMENT; REMODELING COMPLEX; BIVALENT GENES; GENOME;
D O I
10.1016/j.gde.2011.01.015
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
The pluripotent state of embryonic stem cells is maintained by a core network of transcription factors, and by chromatin remodelling factors that support an environment permissive for transcription. Polycomb and trithorax Group proteins enable 'bivalent' chromatin to be established at lineage-specific genes within pluripotent cells that is thought to poise genes for rapid activation upon induction of differentiation. As differentiation proceeds, chromatin condenses and there is a genome-wide increase in the abundance of repressive histone modifications, alterations in the subnuclear organisation of particular genomic regions, and changes in DNA methylation profiles within genes. Reprogramming of somatic cells provides a platform to investigate the role of chromatin-based factors in establishing and maintaining pluripotency.
引用
收藏
页码:140 / 146
页数:7
相关论文
共 57 条
[11]   Ring1B Compacts Chromatin Structure and Represses Gene Expression Independent of Histone Ubiquitination [J].
Eskeland, Ragnhild ;
Leeb, Martin ;
Grimes, Graeme R. ;
Kress, Clemence ;
Boyle, Shelagh ;
Sproul, Duncan ;
Gilbert, Nick ;
Fan, Yuhong ;
Skoultchi, Arthur I. ;
Wutz, Anton ;
Bickmore, Wendy A. .
MOLECULAR CELL, 2010, 38 (03) :452-464
[12]   An RNAi screen of chromatin proteins identifies Tip60-p400 as a regulator of embryonic stem cell identity [J].
Fazzio, Thomas G. ;
Huff, Jason T. ;
Panning, Barbara .
CELL, 2008, 134 (01) :162-174
[13]   Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3K4/K27 trimethylation [J].
Fouse, Shaun D. ;
Shen, Yin ;
Pellegrini, Matteo ;
Cole, Steve ;
Meissner, Alexander ;
Van Neste, Leander ;
Jaenisch, Rudolf ;
Fan, Guoping .
CELL STEM CELL, 2008, 2 (02) :160-169
[14]   Chd1 regulates open chromatin and pluripotency of embryonic stem cells [J].
Gaspar-Maia, Alexandre ;
Alajem, Adi ;
Polesso, Fanny ;
Sridharan, Rupa ;
Mason, Mike J. ;
Heidersbach, Amy ;
Ramalho-Santos, Joao ;
McManus, Michael T. ;
Plath, Kathrin ;
Meshorer, Eran ;
Ramalho-Santos, Miguel .
NATURE, 2009, 460 (7257) :863-U97
[15]   Chromatin remodelling during development [J].
Ho, Lena ;
Crabtree, Gerald R. .
NATURE, 2010, 463 (7280) :474-484
[16]   An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency [J].
Ho, Lena ;
Ronan, Jehnna L. ;
Wu, Jiang ;
Staahl, Brett T. ;
Chen, Lei ;
Kuo, Ann ;
Lessard, Julie ;
Nesvizhskii, Alexey I. ;
Ranish, Jeff ;
Crabtree, Gerald R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (13) :5181-5186
[17]   An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network [J].
Ho, Lena ;
Jothi, Raja ;
Ronan, Jehnna L. ;
Cui, Kairong ;
Zhao, Keji ;
Crabtree, Gerald R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (13) :5187-5191
[18]   Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification [J].
Ito, Shinsuke ;
D'Alessio, Ana C. ;
Taranova, Olena V. ;
Hong, Kwonho ;
Sowers, Lawrence C. ;
Zhang, Yi .
NATURE, 2010, 466 (7310) :1129-U151
[19]   Differentiation and large scale spatial organization of the genome [J].
Joffe, Boris ;
Leonhardt, Heinrich ;
Solovei, Irina .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2010, 20 (05) :562-569
[20]   Epigenetic memory in induced pluripotent stem cells [J].
Kim, K. ;
Doi, A. ;
Wen, B. ;
Ng, K. ;
Zhao, R. ;
Cahan, P. ;
Kim, J. ;
Aryee, M. J. ;
Ji, H. ;
Ehrlich, L. I. R. ;
Yabuuchi, A. ;
Takeuchi, A. ;
Cunniff, K. C. ;
Hongguang, H. ;
Mckinney-Freeman, S. ;
Naveiras, O. ;
Yoon, T. J. ;
Irizarry, R. A. ;
Jung, N. ;
Seita, J. ;
Hanna, J. ;
Murakami, P. ;
Jaenisch, R. ;
Weissleder, R. ;
Orkin, S. H. ;
Weissman, I. L. ;
Feinberg, A. P. ;
Daley, G. Q. .
NATURE, 2010, 467 (7313) :285-U60