A first generation bovine BAC-based physical map

被引：31

作者：

Schibler, L ^{[1
]}

Roig, A

Mahé, MF

Save, JC

Gautier, M

Taourit, S

Boichard, D

Eggen, A

Cribiu, EP

机构：

[1] INRA, Ctr Rech Jouy, Dept Genet Anim, Lab Genet Biochim & Cytogenet, F-78352 Jouy En Josas, France

[2] INRA, Ctr Rech Jouy, Dept Genet Anim, Lab Radiobiol & Etud Genome, F-78352 Jouy En Josas, France

[3] INRA, Ctr Rech Jouy, Dept Genet Anim, Stn Genet Quantitat Appl, F-78352 Jouy En Josas, France

来源：

GENETICS SELECTION EVOLUTION | 2004年 / 36卷 / 01期

关键词：

cattle; physical map; BAC;

D O I：

10.1051/gse:2003054

中图分类号：

S8 [畜牧、动物医学、狩猎、蚕、蜂];

学科分类号：

0905 ;

摘要：

A first generation clone- based physical map for the bovine genome was constructed combining, fluorescent double digestion fingerprinting and sequence tagged site ( STS) marker screening. The BAC clones were selected from an Inra BAC library ( 105 984 clones) and a part of the CHORI- 240 BAC library ( 26 500 clones). The contigs were anchored using the screening information for a total of 1303 markers ( 451 microsatellites, 471 genes, 127 EST, and 254 BAC ends). The final map, which consists of 6615 contigs assembled from 100 923 clones, will be a valuable tool for genomic research in ruminants, including targeted marker production, positional cloning or targeted sequencing of regions of specific interest.

引用

页码：105 / 122

页数：18

共 48 条

[1] Construction and characterization of a large insert porcine YAC library [J].

Alexander, LJ ;

Smith, TPL ;

Beattie, CW ;

Broom, MF .

MAMMALIAN GENOME, 1997, 8 (01) :50-51

[2] An ordered comparative map of the cattle and human genomes [J].

Band, MR ;

Larson, JH ;

Rebeiz, M ;

Green, CA ;

Heyen, DW ;

Donovan, J ;

Windish, R ;

Steining, C ;

Mahyuddin, P ;

Womack, JE ;

Lewin, HA .

GENOME RESEARCH, 2000, 10 (09) :1359-1368

[3] A medium-density genetic linkage map of the bovine genome [J].

Barendse, W ;

Vaiman, D ;

Kemp, SJ ;

Sugimoto, Y ;

Armitage, SM ;

Williams, JL ;

Sun, HS ;

Eggen, A ;

Agaba, M ;

Aleyasin, SA ;

Band, M ;

Bishop, MD ;

Buitkamp, J ;

Byrne, K ;

Collins, F ;

Cooper, L ;

Coppettiers, W ;

Denys, B ;

Drinkwater, RD ;

Easterday, K ;

Elduque, C ;

Ennis, S ;

Erhardt, G ;

Ferretti, L ;

Flavin, N ;

Gao, Q ;

Georges, M ;

Gurung, R ;

Harlizius, B ;

Hawkins, G ;

Hetzel, J ;

Hirano, T ;

Hulme, D ;

Jorgensen, C ;

Kessler, M ;

Kirkpatrick, BW ;

Konfortov, B ;

Kostia, S ;

Kuhn, C ;

Lenstra, JA ;

Leveziel, H ;

Lewin, HA ;

Leyhe, B ;

Lil, L ;

Burriel, IM ;

McGraw, RA ;

Miller, JR ;

Moody, DE ;

Moore, SS ;

Nakane, S .

MAMMALIAN GENOME, 1997, 8 (01) :21-28

[4] CONSTRUCTION OF A LARGE-INSERT YEAST ARTIFICIAL CHROMOSOME LIBRARY FROM SHEEP DNA [J].

BROOM, MF ;

HILL, DF .

MAMMALIAN GENOME, 1994, 5 (12) :817-819

[5] Construction and characterization of a gridded cattle BAC library [J].

Buitkamp, J ;

Kollers, S ;

Durstewitz, G ;

Fries, R ;

Welzel, K ;

Schäfer, K ;

Kellermann, A ;

Lehrach, H .

ANIMAL GENETICS, 2000, 31 (06) :347-351

[6] CONSTRUCTION AND CHARACTERIZATION OF A BOVINE BACTERIAL ARTIFICIAL CHROMOSOME LIBRARY [J].

CAI, L ;

TAYLOR, JF ;

WING, RA ;

GALLAGHER, DS ;

WOO, SS ;

DAVIS, SK .

GENOMICS, 1995, 29 (02) :413-425

[7]

Cao YC, 1999, GENOME RES, V9, P763

[8] An integrated physical and genetic map of the rice genome [J].

Chen, MS ;

Presting, G ;

Barbazuk, WB ;

Goicoechea, JL ;

Blackmon, B ;

Fang, FC ;

Kim, H ;

Frisch, D ;

Yu, YS ;

Sun, SH ;

Higingbottom, S ;

Phimphilai, J ;

Phimphilai, D ;

Thurmond, S ;

Gaudette, B ;

Li, P ;

Liu, JD ;

Hatfield, J ;

Main, D ;

Farrar, K ;

Henderson, C ;

Barnett, L ;

Costa, R ;

Williams, B ;

Walser, S ;

Atkins, M ;

Hall, C ;

Budiman, MA ;

Tomkins, JP ;

Luo, MZ ;

Bancroft, I ;

Salse, J ;

Regad, F ;

Mohapatra, T ;

Singh, NK ;

Tyagi, AK ;

Soderlund, C ;

Dean, RA ;

Wing, RA .

PLANT CELL, 2002, 14 (03) :537-545

[9]

CHUMAKOV IM, 1995, NATURE, V377, P175

[10] TOWARD A PHYSICAL MAP OF THE GENOME OF THE NEMATODE CAENORHABDITIS-ELEGANS [J].

COULSON, A ;

SULSTON, J ;

BRENNER, S ;

KARN, J .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1986, 83 (20) :7821-7825

← 1 2 3 4 5 →