The Great Lakes National Program Office of the U.S. EPA has been conducting biological monitoring of the Laurentian Great Lakes since 1983. This paper presents synoptic survey data of phytoplankton communities from all five lakes. These communities were highly diverse, each lake typically supporting over 100 species during both the spring and summer surveys. Much of that diversity was contributed by diatoms, which dominated the plankton of all lakes except Lake Superior in the spring. Summer communities shifted away from diatoms, toward chrysophytes in the upper lakes and chlorophytes in the lower lakes. Ordination analyses indicated the close similarity of communities in the upper lakes, in particular Lakes Huron and Michigan, and a diverse range of communities in Lake Erie. Floristically, Lake Ontario was fundamentally different from all other lakes.