BRCA2 controls DNA:RNA hybrid level at DSBs by mediating RNase H2 recruitment

被引:183
作者
D'Alessandro, Giuseppina [1 ]
Whelan, Donna Rose [2 ]
Howard, Sean Michael [3 ]
Vitelli, Valerio [1 ]
Renaudin, Xavier [4 ]
Adamowicz, Marek [1 ,7 ]
Iannelli, Fabio [1 ]
Jones-Weinert, Corey Winston [1 ]
Lee, MiYoung [4 ]
Matti, Valentina [1 ]
Lee, Wei Ting C. [2 ]
Morten, Michael John [2 ]
Venkitaraman, Ashok Raraakrishnan [4 ]
Cejka, Petr [3 ,5 ]
Rothenberg, Eli [2 ]
di Fagagna, Fabrizio d'Adda [1 ,6 ]
机构
[1] FIRC Inst Mol Oncol, IFOM, Via Adamello 16, I-20139 Milan, Italy
[2] NYU, Sch Med, Dept Biochem & Mol Pharmacol, New York, NY 10016 USA
[3] Univ Svizzera Italiana, Inst Res Biomed, Via Vela 6, CH-6500 Bellinzona, Switzerland
[4] Univ Cambridge, Med Res Council, Canc Unit, Hills Rd, Cambridge CB2 0XZ, England
[5] Swiss Fed Inst Technol, Inst Biochem, Dept Biol, Otto Stern Weg 3, CH-8093 Zurich, Switzerland
[6] CNR, IGM, Via Abbiategrasso 207, I-27100 Pavia, Italy
[7] Univ Sussex, Sch Life Sci, Genome Damage & Stabil Ctr, Brighton BN1 9RH, E Sussex, England
基金
欧洲研究理事会; 瑞士国家科学基金会; 英国医学研究理事会;
关键词
DOUBLE-STRAND BREAK; DAMAGE RESPONSE; HOMOLOGOUS RECOMBINATION; POLYMERASE-II; GOUTIERES-SYNDROME; END RESECTION; NASCENT RNA; REPAIR; REPLICATION; PROTEIN;
D O I
10.1038/s41467-018-07799-2
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
DNA double-strand breaks (DSBs) are toxic DNA lesions, which, if not properly repaired, may lead to genomic instability, cell death and senescence. Damage-induced long non-coding RNAs (dilncRNAs) are transcribed from broken DNA ends and contribute to DNA damage response (DDR) signaling. Here we show that dilncRNAs play a role in DSB repair by homologous recombination (HR) by contributing to the recruitment of the HR proteins BRCA1, BRCA2, and RAD51, without affecting DNA-end resection. In S/G2-phase cells, dilncRNAs pair to the resected DNA ends and form DNA: RNA hybrids, which are recognized by BRCA1. We also show that BRCA2 directly interacts with RNase H2, mediates its localization to DSBs in the S/G2 cell-cycle phase, and controls DNA: RNA hybrid levels at DSBs. These results demonstrate that regulated DNA: RNA hybrid levels at DSBs contribute to HRmediated repair.
引用
收藏
页数:17
相关论文
共 73 条
[1]   BRCA1 protein is linked to the RNA polymerase II holoenzyme complex via RNA helicase a [J].
Anderson, SE ;
Schlegel, BP ;
Nakajima, T ;
Wolpin, ES ;
Parvin, JD .
NATURE GENETICS, 1998, 19 (03) :254-256
[2]   RNaseH1 regulates TERRA-telomeric DNA hybrids and telomere maintenance in ALT tumour cells [J].
Arora, Rajika ;
Lee, Yongwoo ;
Wischnewski, Harry ;
Brun, Catherine M. ;
Schwarz, Tobias ;
Azzalin, Claus M. .
NATURE COMMUNICATIONS, 2014, 5
[3]   A Method for Quantifying Molecular Interactions Using Stochastic Modelling and Super-Resolution Microscopy [J].
Bermudez-Hernandez, Keria ;
Keegan, Sarah ;
Whelan, Donna R. ;
Reid, Dylan A. ;
Zagelbaum, Jennifer ;
Yin, Yandong ;
Ma, Sisi ;
Rothenberg, Eli ;
Fenyo, David .
SCIENTIFIC REPORTS, 2017, 7
[4]   BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2 [J].
Bhatia, Vaibhav ;
Barroso, Sonia I. ;
Garcia-Rubio, Maria L. ;
Tumini, Emanuela ;
Herrera-Moyano, Emilia ;
Aguilera, Andres .
NATURE, 2014, 511 (7509) :362-+
[5]   DNA damage triggers SAF-A and RNA biogenesis factors exclusion from chromatin coupled to R-loops removal [J].
Britton, Sebastien ;
Dernoncourt, Emma ;
Delteil, Christine ;
Froment, Carine ;
Schiltz, Odile ;
Salles, Bernard ;
Frit, Philippe ;
Calsou, Patrick .
NUCLEIC ACIDS RESEARCH, 2014, 42 (14) :9047-9062
[6]   53BP1 Inhibits Homologous Recombination in Brca1-Deficient Cells by Blocking Resection of DNA Breaks [J].
Bunting, Samuel F. ;
Callen, Elsa ;
Wong, Nancy ;
Chen, Hua-Tang ;
Polato, Federica ;
Gunn, Amanda ;
Bothmer, Anne ;
Feldhahn, Niklas ;
Fernandez-Capetillo, Oscar ;
Cao, Liu ;
Xu, Xiaoling ;
Deng, Chu-Xia ;
Finkel, Toren ;
Nussenzweig, Michel ;
Stark, Jeremy M. ;
Nussenzweig, Andre .
CELL, 2010, 141 (02) :243-254
[7]   CellProfiler: image analysis software for identifying and quantifying cell phenotypes [J].
Carpenter, Anne E. ;
Jones, Thouis Ray ;
Lamprecht, Michael R. ;
Clarke, Colin ;
Kang, In Han ;
Friman, Ola ;
Guertin, David A. ;
Chang, Joo Han ;
Lindquist, Robert A. ;
Moffat, Jason ;
Golland, Polina ;
Sabatini, David M. .
GENOME BIOLOGY, 2006, 7 (10)
[8]   Repair Pathway Choices and Consequences at the Double-Strand Break [J].
Ceccaldi, Raphael ;
Rondinelli, Beatrice ;
D'Andrea, Alan D. .
TRENDS IN CELL BIOLOGY, 2016, 26 (01) :52-64
[9]   DNA End Resection: Nucleases Team Up with the Right Partners to Initiate Homologous Recombination [J].
Cejka, Petr .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2015, 290 (38) :22931-22938
[10]   The full-length Saccharomyces cerevisiae Sgs1 protein is a vigorous DNA helicase that preferentially unwinds holliday junctions [J].
Cejka P. ;
Kowalczykowski S.C. .
Journal of Biological Chemistry, 2010, 285 (11) :8290-8301