Determination of the NMR structure of Gln25-ribonuclease T1

被引:8
作者
Hatano, K
Kojima, M
Suzuki, E
Tanokura, M
Takahashi, K
机构
[1] Gunma Univ, Fac Engn, Dept Biol Sci, Gunma 3768515, Japan
[2] Tokyo Univ Pharm & Life Sci, Sch Life Sci, Dept Mol Biochem, Tokyo 1920392, Japan
[3] Ajinomoto Co Inc, Cent Res Labs, Kawasaki, Kanagawa 210, Japan
[4] Univ Tokyo, Grad Sch Agr & Life Sci, Dept Appl Biol Chem, Bunkyo Ku, Tokyo 1138657, Japan
关键词
electrostatic interaction; guanyloribonuclease; nuclear magnetic resonance; pK(a) calculation; ribonuclease T-1; structure calculation;
D O I
10.1515/BC.2003.130
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Ribonuclease (RNase) T1 is a guanyloribonuclease, having two isozymes in nature, Gln25- and Lys25- RNase T1. Between these two isozymes, there is no difference in catalytic activity and threedimensional structure; however, Lys25-RNase T1 is slightly more stable than Gln25-RNase T1. Recently, it has been suggested that the existence of a salt bridge between Lys25 and Asp29/Glu31 in Lys25-RNase T1 contributes to the stability. To elucidate the effects of the replacement of Lys25 with a Gln on the conformation and microenvironments of RNase T1 in detail, the threedimensional solution structure of Gln25-RNase T1 was determined by simulatedannealing calculations. As a result, the topology of the overall folding was shown to be very similar to that of the Lys25-isozyme except for some differences. In particular, there were two differences in the property of torsion angles of the two disulfide bonds and the conformations of the residues 1113, 6366, and 9293. With regard to the residues 1113, the lack of the abovementioned salt bridge in Gln25-RNase T1 was thought to induce the conformational difference of this segment as compared with the Lys25-isozyme. Furthermore, it was proposed that the perturbation of this segment might transfer to the residues 9293 via the two disulfide bonds.
引用
收藏
页码:1173 / 1183
页数:11
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