MetaCrop:: a detailed database of crop plant metabolism

被引:31
作者
Grafahrend-Belau, Eva [1 ]
Weise, Stephan [1 ]
Koschuetzki, Dirk [1 ]
Scholz, Uwe [1 ]
Junker, Bjoern H. [1 ]
Schreiber, Falk [1 ]
机构
[1] Leibniz Inst Plant Genet & Crop Plant Res IPK, D-06466 Gatersleben, Germany
关键词
D O I
10.1093/nar/gkm835
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
MetaCrop is a manually curated repository of high quality information concerning the metabolism of crop plants. This includes pathway diagrams, reactions, locations, transport processes, reaction kinetics, taxonomy and literature. MetaCrop provides detailed information on six major crop plants with high agronomical importance and initial information about several other plants. The web interface supports an easy exploration of the information from overview pathways to single reactions and therefore helps users to understand the metabolism of crop plants. It also allows model creation and automatic data export for detailed models of metabolic pathways therefore supporting systems biology approaches. The MetaCrop database is accessible at http://metacrop.ipk-gatersleben.de.
引用
收藏
页码:D954 / D958
页数:5
相关论文
共 26 条
[1]   Tools for kinetic modeling of biochemical networks [J].
Alves, Rui ;
Antunes, Fernando ;
Salvador, Armindo .
NATURE BIOTECHNOLOGY, 2006, 24 (06) :667-672
[2]   The ENZYME database in 2000 [J].
Bairoch, A .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :304-305
[3]   BRENDA, AMENDA and FRENDA: the enzyme information system in 2007 [J].
Barthelmes, Jens ;
Ebeling, Christian ;
Chang, Antje ;
Schomburg, Ida ;
Schomburg, Dietmar .
NUCLEIC ACIDS RESEARCH, 2007, 35 :D511-D514
[4]  
Bewley J.D., 2013, SEEDS, DOI DOI 10.1007/978-1-4899-1002-8_1
[5]   The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 [J].
Boeckmann, B ;
Bairoch, A ;
Apweiler, R ;
Blatter, MC ;
Estreicher, A ;
Gasteiger, E ;
Martin, MJ ;
Michoud, K ;
O'Donovan, C ;
Phan, I ;
Pilbout, S ;
Schneider, M .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :365-370
[6]  
Buchanan BB., 2015, Biochemistry and Molecular Biology of Plants
[7]   Engineering central metabolism in crop species: learning the system [J].
Carrari, F ;
Urbanczyk-Wochniak, E ;
Willmitzer, L ;
Fernie, AR .
METABOLIC ENGINEERING, 2003, 5 (03) :191-200
[8]   MetaCyc: a multiorganism database of metabolic pathways and enzymes [J].
Caspi, Ron ;
Foerster, Hartmut ;
Fulcher, Carol A. ;
Hopkinson, Rebecca ;
Ingraham, John ;
Kaipa, Pallavi ;
Krummenacker, Markus ;
Paley, Suzanne ;
Pick, John ;
Rhee, Seung Y. ;
Tissier, Christophe ;
Zhang, Peifen ;
Karp, Peter D. .
NUCLEIC ACIDS RESEARCH, 2006, 34 :D511-D516
[9]   A draft sequence of the rice genome (Oryza sativa L. ssp japonica) [J].
Goff, SA ;
Ricke, D ;
Lan, TH ;
Presting, G ;
Wang, RL ;
Dunn, M ;
Glazebrook, J ;
Sessions, A ;
Oeller, P ;
Varma, H ;
Hadley, D ;
Hutchinson, D ;
Martin, C ;
Katagiri, F ;
Lange, BM ;
Moughamer, T ;
Xia, Y ;
Budworth, P ;
Zhong, JP ;
Miguel, T ;
Paszkowski, U ;
Zhang, SP ;
Colbert, M ;
Sun, WL ;
Chen, LL ;
Cooper, B ;
Park, S ;
Wood, TC ;
Mao, L ;
Quail, P ;
Wing, R ;
Dean, R ;
Yu, YS ;
Zharkikh, A ;
Shen, R ;
Sahasrabudhe, S ;
Thomas, A ;
Cannings, R ;
Gutin, A ;
Pruss, D ;
Reid, J ;
Tavtigian, S ;
Mitchell, J ;
Eldredge, G ;
Scholl, T ;
Miller, RM ;
Bhatnagar, S ;
Adey, N ;
Rubano, T ;
Tusneem, N .
SCIENCE, 2002, 296 (5565) :92-100
[10]   Improving the nutrient composition of plants to enhance human nutrition and health [J].
Grusak, MA ;
DellaPenna, D .
ANNUAL REVIEW OF PLANT PHYSIOLOGY AND PLANT MOLECULAR BIOLOGY, 1999, 50 :133-161