SLAM web server for comparative gene finding and alignment

被引：9

作者：

Cawley, S

Pachter, L

Alexandersson, M

机构：

[1] Affymetrix Inc, Emeryville, CA 94608 USA

[2] Univ Calif Berkeley, Dept Math, Berkeley, CA 94720 USA

[3] Fraunhofer Chalmers Ctr, Gothenburg, Sweden

来源：

NUCLEIC ACIDS RESEARCH | 2003年 / 31卷 / 13期

关键词：

D O I：

10.1093/nar/gkg583

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

SLAM is a program that simultaneously aligns and annotates pairs of homologous sequences. The SLAM web server integrates SLAM with repeat masking tools and the AVID alignment program to allow for rapid alignment and gene prediction in user submitted sequences. Along with annotations and alignments for the submitted sequences, users obtain a list of predicted conserved non-coding sequences (and their associated alignments). The web site also links to whole genome annotations of the human, mouse and rat genomes produced with the SLAM program. The server can be accessed at http://bio.math.berkeley.edu/slam.

引用

页码：3507 / 3509

页数：3

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