Ansig for Windows:: An interactive computer program for semiautomatic assignment of protein NMR spectra

被引:85
作者
Helgstrand, M
Kraulis, P
Allard, P
Härd, T [1 ]
机构
[1] Royal Inst Technol, Ctr Struct Biochem, Dept Biotechnol, Novum, SE-14157 Huddinge, Sweden
[2] Stockholm Univ, Dept Biochem, Stockholm Bioinformat Ctr, SE-10691 Stockholm, Sweden
关键词
assignment software; interactive graphics; protein NMR; protein structure determination; semiautomatic assignment; sequential assignment;
D O I
10.1023/A:1026729404698
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Assignment of NMR spectra is a prerequisite for structure determination of proteins using NMR. The time spent on the assignment is comparatively long compared to that spent on other parts in the protein structure determination process, but it can be shortened by using either interactive or fully automated computer programs. To benefit from the advantages of both types of program we have developed a version of the interactive assignment program ANSIG to include automatized, yet user-supervised, routines. The new program includes tools for (i) semiautomatic sequential assignment, (ii) plotting of distances from PDB structure files directly in NMR spectra and (iii) statistical analysis of distance restraint violations with the possibility to directly zoom to violated NOEs in NOESY spectra.
引用
收藏
页码:329 / 336
页数:8
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