PRIDE Inspector: a tool to visualize and validate MS proteomics data

被引：94

作者：

Wang, Rui ^{[1
]}

Fabregat, Antonio ^{[1
]}

Rios, Daniel ^{[1
]}

Ovelleiro, David ^{[1
]}

Foster, Joseph M. ^{[1
]}

Cote, Richard G. ^{[1
]}

Griss, Johannes ^{[1
,2
]}

Csordas, Attila ^{[1
]}

Perez-Riverol, Yasset ^{[1
,3
]}

Reisinger, Florian ^{[1
]}

Hermjakob, Henning ^{[1
]}

Martens, Lennart ^{[4
,5
]}

Vizcaino, Juan Antonio ^{[1
]}

机构：

[1] EBI, EMBL Outstn, Cambridge, England

[2] Med Univ Vienna, Dept Med 1, Vienna, Austria

[3] Ctr Genet Engn & Biotechnol, Dept Prote, Playa, Ciudad De La Ha, Cuba

[4] Univ Ghent VIB, Dept Med Prot Res, B-9052 Ghent, Belgium

[5] Univ Ghent, Dept Biochem, B-9000 Ghent, Belgium

来源：

NATURE BIOTECHNOLOGY | 2012年 / 30卷 / 02期

基金：

英国惠康基金;

关键词：

RESOURCE;

D O I：

10.1038/nbt.2112

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

引用

页码：135 / 137

页数：3

共 10 条

[1] PRIDEViewer: A novel user-friendly interface to visualize PRIDE XML files [J].

Alberto Medina-Aunon, J. ;

Carazo, Jose M. ;

Pablo Albar, Juan .

PROTEOMICS, 2011, 11 (02) :334-337

[2] PRIDE Converter: making proteomics data-sharing easy [J].

Barsnes, Harald ;

Vizcaino, Juan Antonio ;

Eidhammer, Ingvar ;

Martens, Lennart .

NATURE BIOTECHNOLOGY, 2009, 27 (07) :598-599

[3] Editorial [J].

Christie, Alastair ;

Campbell, Jim .

SOCIAL WORK EDUCATION, 2009, 28 (06) :579-582

[4] PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows [J].

Deutsch, Eric W. ;

Lam, Henry ;

Aebersold, Ruedi .

EMBO REPORTS, 2008, 9 (05) :429-434

[5]

Eisenacher M, 2011, METHODS MOL BIOL, V696, P161, DOI 10.1007/978-1-60761-987-1_10

[6] ProteomeCommons.org Collaborative Annotation and Project Management Resource Integrated With the Tranche Repository [J].

Hill, James A. ;

Smith, Bryan E. ;

Papoulias, Panagiotis G. ;

Andrews, Philip C. .

JOURNAL OF PROTEOME RESEARCH, 2010, 9 (06) :2809-2811

[7] mzML-a Community Standard for Mass Spectrometry Data [J].

Martens, Lennart ;

Chambers, Matthew ;

Sturm, Marc ;

Kessner, Darren ;

Levander, Fredrik ;

Shofstahl, Jim ;

Tang, Wilfred H. ;

Roempp, Andreas ;

Neumann, Steffen ;

Pizarro, Angel D. ;

Montecchi-Palazzi, Luisa ;

Tasman, Natalie ;

Coleman, Mike ;

Reisinger, Florian ;

Souda, Puneet ;

Hermjakob, Henning ;

Binz, Pierre-Alain ;

Deutsch, Eric W. .

MOLECULAR & CELLULAR PROTEOMICS, 2011, 10 (01)

[8] Interpretation of shotgun proteomic data - The protein inference problem [J].

Nesvizhskii, AI ;

Aebersold, R .

MOLECULAR & CELLULAR PROTEOMICS, 2005, 4 (10) :1419-1440

[9] Scaffold: A bioinformatic tool for validating MS/MS-based proteomic studies [J].

Searle, Brian C. .

PROTEOMICS, 2010, 10 (06) :1265-1269

[10] The Proteomics Identifications database: 2010 update [J].

Vizcaino, Juan Antonio ;

Cote, Richard ;

Reisinger, Florian ;

Barsnes, Harald ;

Foster, Joseph M. ;

Rameseder, Jonathan ;

Hermjakob, Henning ;

Martens, Lennart .

NUCLEIC ACIDS RESEARCH, 2010, 38 :D736-D742

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