Expanding the realm of ultrafast protein folding:: gpW, a midsize natural single-domain with α+β topology that folds downhill

被引:73
作者
Fung, Adam [1 ,2 ]
Li, Peng [1 ,2 ]
Godoy-Ruiz, Raquel [1 ,2 ,3 ]
Sanchez-Ruiz, Jose M. [3 ]
Munoz, Victor [1 ,2 ,4 ]
机构
[1] Univ Maryland, Dept Chem & Biochem, College Pk, MD 20742 USA
[2] Univ Maryland, Ctr Biomol Struct & Org, College Pk, MD 20742 USA
[3] Univ Granada, Fac Ciencias, Dept Quim Fis, E-18071 Granada, Spain
[4] CSIC, Ctr Invest Biol, Madrid 28040, Spain
关键词
D O I
10.1021/ja801401a
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
All ultrafast folding proteins known to date are either very small in size (less than 45 residues), have an a-helix bundle topology, or have been artificially engineered. In fact, many of them share two or even all three features. Here we show that gpW, a natural 62-residue alpha+beta protein expected to fold slowly in a two-state fashion, folds in microseconds (i.e., from tau = 33 mu s at 310 K to tau = 1.7 us at 355 K). Thermodynamic analyses of gpW reveal probe dependent thermal denaturation, complex coupling between two denaturing agents, and differential scanning calorimetry (DSC) thermogram characteristic of folding over a negligible thermodynamic folding barrier. The free energy surface analysis of gpW folding kinetics also produces a marginal folding barrier of about thermal energy (RT) at the denaturation midpoint. From these results we conclude that gpW folds in the downhill regime and is close to the global downhill limit. This protein seems to be poised toward downhill folding by a loosely packed hydrophobic core with low aromatic content, large stabilizing contributions from local interactions, and abundance of positive charges on the native surface. These special features, together with a complex functional role in bacteriophage A assembly, suggest that gpW has been engineered to fold downhill by natural selection.
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收藏
页码:7489 / 7495
页数:7
相关论文
共 46 条
[1]   The nature of the free energy barriers to two-state folding [J].
Akmal, A ;
Muñoz, V .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2004, 57 (01) :142-152
[2]   FUNNELS, PATHWAYS, AND THE ENERGY LANDSCAPE OF PROTEIN-FOLDING - A SYNTHESIS [J].
BRYNGELSON, JD ;
ONUCHIC, JN ;
SOCCI, ND ;
WOLYNES, PG .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1995, 21 (03) :167-195
[3]   The energy landscape of a fast-folding protein mapped by Ala->Gly substitutions [J].
Burton, RE ;
Huang, GS ;
Daugherty, MA ;
Calderone, TL ;
Oas, TG .
NATURE STRUCTURAL BIOLOGY, 1997, 4 (04) :305-310
[4]   Origins of barriers and barrierless folding in BBL [J].
Cho, Samuel S. ;
Weinkam, Patrick ;
Wolynes, Peter G. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (01) :118-123
[5]   Mapping the transition state of the WW domain β-sheet [J].
Crane, JC ;
Koepf, EK ;
Kelly, JW ;
Gruebele, M .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 298 (02) :283-292
[6]   Energy minimizations with a combination of two knowledge-based potentials for protein folding [J].
de Sancho, David ;
Rey, Antonio .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2008, 29 (10) :1684-1692
[7]   Infrared studies of fast events in protein folding [J].
Dyer, RB ;
Gai, F ;
Woodruff, WH .
ACCOUNTS OF CHEMICAL RESEARCH, 1998, 31 (11) :709-716
[8]   Submillisecond kinetics of protein folding [J].
Eaton, WA ;
Munoz, V ;
Thompson, PA ;
Chan, CK ;
Hofrichter, J .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1997, 7 (01) :10-14
[9]   Three-body interactions improve the prediction of rate and mechanism in protein folding models [J].
Ejtehadi, MR ;
Avall, SP ;
Plotkin, SS .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (42) :15088-15093
[10]   One-state downhill versus conventional protein folding [J].
Ferguson, N ;
Schartau, PJ ;
Sharpe, TD ;
Sato, S ;
Fersht, AR .
JOURNAL OF MOLECULAR BIOLOGY, 2004, 344 (02) :295-301