Geographical Location Determines the Population Structure in Phyllosphere Microbial Communities of a Salt-Excreting Desert Tree

被引:138
作者
Finkel, Omri M. [1 ]
Burch, Adrien Y. [2 ]
Lindow, Steven E. [2 ]
Post, Anton F. [3 ]
Belkin, Shimshon [1 ]
机构
[1] Hebrew Univ Jerusalem, Inst Life Sci, IL-91904 Jerusalem, Israel
[2] Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA
[3] Marine Biol Lab, Josephine Bay Paul Ctr Comparat Mol Biol & Evolut, Woods Hole, MA 02543 USA
基金
美国国家科学基金会;
关键词
LEAF SURFACE; DIVERSITY; PLANTS; MICROORGANISMS; BIOGEOGRAPHY; ECOLOGY; SYSTEM; SEA;
D O I
10.1128/AEM.05565-11
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The leaf surfaces of Tamarix, a salt-secreting desert tree, harbor a diverse community of microbial epiphytes. This ecosystem presents a unique combination of ecological characteristics and imposes a set of extreme stress conditions. The composition of the microbial community along ecological gradients was studied from analyses of microbial richness and diversity in the phyllosphere of three Tamarix species in the Mediterranean and Dead Sea regions in Israel and in two locations in the United States. Over 200,000 sequences of the 16S V6 and 18S V9 hypervariable regions revealed a diverse community, with 788 bacterial and 64 eukaryotic genera but only one archaeal genus. Both geographic location and tree species were determinants of microbial community structures, with the former being more dominant. Tree leaves of all three species in the Mediterranean region were dominated by Halomonas and Halobacteria, whereas trees from the Dead Sea area were dominated by Actinomycetales and Bacillales. Our findings demonstrate that microbial phyllosphere communities on different Tamarix species are highly similar in the same locale, whereas trees of the same species that grow in different climatic regions host distinct microbial communities.
引用
收藏
页码:7647 / 7655
页数:9
相关论文
共 41 条
[1]   A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes [J].
Amaral-Zettler, Linda A. ;
McCliment, Elizabeth A. ;
Ducklow, Hugh W. ;
Huse, Susan M. .
PLOS ONE, 2009, 4 (07)
[2]   FUNGI, LEAVES, AND THE THEORY OF ISLAND BIOGEOGRAPHY [J].
ANDREWS, JH ;
KINKEL, LL ;
BERBEE, FM ;
NORDHEIM, EV .
MICROBIAL ECOLOGY, 1987, 14 (03) :277-290
[3]   The ecology and biogeography of microorganisms of plant surfaces [J].
Andrews, JH ;
Harris, RF .
ANNUAL REVIEW OF PHYTOPATHOLOGY, 2000, 38 :145-180
[4]  
Belkin S, 2010, CELL ORIG LIFE EXTRE, V17, P395, DOI 10.1007/978-90-481-9449-0_19
[5]   Comparative community genomics in the Dead Sea: an increasingly extreme environment [J].
Bodaker, Idan ;
Sharon, Itai ;
Suzuki, Marcelino T. ;
Feingersch, Roi ;
Shmoish, Michael ;
Andreishcheva, Ekaterina ;
Sogin, Mitchell L. ;
Rosenberg, Mira ;
Maguire, Michael E. ;
Belkin, Shimshon ;
Oren, Aharon ;
Beja, Oded .
ISME JOURNAL, 2010, 4 (03) :399-407
[6]   AN ORDINATION OF THE UPLAND FOREST COMMUNITIES OF SOUTHERN WISCONSIN [J].
BRAY, JR ;
CURTIS, JT .
ECOLOGICAL MONOGRAPHS, 1957, 27 (04) :326-349
[7]   ESTIMATING THE NUMBER OF CLASSES VIA SAMPLE COVERAGE [J].
CHAO, A ;
LEE, SM .
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 1992, 87 (417) :210-217
[8]   Community proteogenomics reveals insights into the physiology of phyllosphere bacteria [J].
Delmotte, Nathanael ;
Knief, Claudia ;
Chaffron, Samuel ;
Innerebner, Gerd ;
Roschitzki, Bernd ;
Schlapbach, Ralph ;
von Mering, Christian ;
Vorholt, Julia A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (38) :16428-16433
[9]   The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing [J].
Dethlefsen, Les ;
Huse, Sue ;
Sogin, Mitchell L. ;
Relman, David A. .
PLOS BIOLOGY, 2008, 6 (11) :2383-2400
[10]   Experimental factors affecting PCR-based estimates of microbial species richness and evenness [J].
Engelbrektson, Anna ;
Kunin, Victor ;
Wrighton, Kelly C. ;
Zvenigorodsky, Natasha ;
Chen, Feng ;
Ochman, Howard ;
Hugenholtz, Philip .
ISME JOURNAL, 2010, 4 (05) :642-647