SABmark - a benchmark for sequence alignment that covers the entire known fold space

被引：150

作者：

Van Walle, I

Lasters, I

Wyns, L

机构：

[1] Free Univ Brussels, Dept Ultrastruct, B-1050 Brussels, Belgium

[2] Algon NV, B-9052 Ghent, Belgium

来源：

BIOINFORMATICS | 2005年 / 21卷 / 07期

关键词：

D O I：

10.1093/bioinformatics/bth493

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Summary: The Sequence Alignment Benchmark (SABmark) provides sets of multiple alignment problems derived from the SCOP classification. These sets, Twilight Zone and Superfamilies, both cover the entire known fold space using sequences with very low to low, and low to intermediate similarity, respectively. In addition, each set has an alternate version in which unalignable but apparently similar sequences are added to each problem.

引用

收藏

页码：1267 / 1268

页数：2

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