Insulator and silencer sequences in the imprinted region of human chromosome 11p15.5

被引:52
作者
Du, MJ
Beatty, LG
Zhou, WJ
Lew, J
Schoenherr, C
Weksberg, R
Sadowski, PD [1 ]
机构
[1] Univ Toronto, Dept Mol & Med Genet, Toronto, ON M5S 1A8, Canada
[2] Univ Illinois, Dept Cell & Struct Biol, Urbana, IL 61801 USA
[3] Univ Toronto, Dept Paediat, Toronto, ON M5G 1X8, Canada
[4] Hosp Sick Children, Dept Clin & Metab Genet, Toronto, ON M5G 1X8, Canada
关键词
D O I
10.1093/hmg/ddg194
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The imprinting of the genes on human chromosome 11p15.5 is thought to be controlled by two imprinting control regions located in two differentially methylated CpG islands upstream of the H19 gene (H19 DMR) and in intron 10 of the KCNQ1 gene (KvDMR). We have examined sequences in the human 11p15.5 genomic imprinted region for the presence of insulators and silencers using a position- and enhancer-dependent stable transfection assay. We have confirmed the existence of insulators in H19 DMR and discovered two novel insulators in the IGF2 gene. We have also found two novel silencer sequences; one is located in KvDMR, a region that is thought to contain the promoter for the KCNQ1OT1 transcript, and another is in the CDKN1C gene. We have demonstrated binding of CTCF protein in vitro to all the insulator and silencer sequences that we have detected. We discuss the differences in the regulation of imprinting controlled by the two imprinting control regions in chromosome 11p.
引用
收藏
页码:1927 / 1939
页数:13
相关论文
共 65 条
  • [11] Imprinting mechanisms
    Constancia, M
    Pickard, B
    Kelsey, G
    Reik, W
    [J]. GENOME RESEARCH, 1998, 8 (09) : 881 - 900
  • [12] Epigenetic alterations of H19 and LIT1 distinguish patients with Beckwith-Wiedemann syndrome with cancer and birth defects
    DeBaun, MR
    Niemitz, EL
    McNeil, DE
    Brandenburg, SA
    Lee, MP
    Feinberg, AP
    [J]. AMERICAN JOURNAL OF HUMAN GENETICS, 2002, 70 (03) : 604 - 611
  • [13] Methylation-dependent silencing at the H19 imprinting control region by MeCP2
    Drewell, RA
    Goddard, CJ
    Thomas, JO
    Surani, MA
    [J]. NUCLEIC ACIDS RESEARCH, 2002, 30 (05) : 1139 - 1144
  • [14] Epigenotype-phenotype correlations in Beckwith-Wiedemann syndrome
    Engel, JR
    Smallwood, A
    Harper, A
    Higgins, MJ
    Oshimura, M
    Reik, O
    Schofield, PN
    Maher, ER
    [J]. JOURNAL OF MEDICAL GENETICS, 2000, 37 (12) : 921 - 926
  • [15] Filippova GN, 1996, MOL CELL BIOL, V16, P2802
  • [16] A potential imprint control element -: identification of a conserved 42 bp sequence upstream of H19
    Frevel, MAE
    Hornberg, JJ
    Reeve, AE
    [J]. TRENDS IN GENETICS, 1999, 15 (06) : 216 - 218
  • [17] CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus
    Hark, AT
    Schoenherr, CJ
    Katz, DJ
    Ingram, RS
    Levorse, JM
    Tilghman, SM
    [J]. NATURE, 2000, 405 (6785) : 486 - 489
  • [18] An imprinted gene p57(KIP2) is mutated in Beckwith-Wiedemann syndrome
    Hatada, I
    Ohashi, H
    Fukushima, Y
    Kaneko, Y
    Inoue, M
    Komoto, Y
    Okada, A
    Ohishi, S
    Nabetani, A
    Morisaki, H
    Nakayama, M
    Niikawa, N
    Mukai, T
    [J]. NATURE GENETICS, 1996, 14 (02) : 171 - 173
  • [19] New p57(KIP2) mutations in Beckwith-Wiedemann syndrome
    Hatada, I
    Nabetani, A
    Morisaki, H
    Xin, ZH
    Ohishi, S
    Tonoki, H
    Niikawa, N
    Inoue, M
    Komoto, Y
    Okada, A
    Steichen, E
    Ohashi, H
    Fukushima, Y
    Nakayama, M
    Mukai, T
    [J]. HUMAN GENETICS, 1997, 100 (5-6) : 681 - 683
  • [20] Targeted disruption of the human LIT1 locus defines a putative imprinting control element playing an essential role in Beckwith-Wiedemann syndrome
    Horike, S
    Mitsuya, K
    Meguro, M
    Kotobuki, N
    Kashiwagi, A
    Notsu, T
    Schulz, TC
    Shirayoshi, Y
    Oshimura, M
    [J]. HUMAN MOLECULAR GENETICS, 2000, 9 (14) : 2075 - 2083