SitePainter: a tool for exploring biogeographical patterns

被引：16

作者：

Gonzalez, Antonio ^{[1
]}

Stombaugh, Jesse ^{[2
]}

Lauber, Christian L. ^{[3
,4
]}

Fierer, Noah ^{[3
,4
]}

Knight, Rob ^{[2
,5
]}

机构：

[1] Univ Colorado, Dept Comp Sci, Boulder, CO 80309 USA

[2] Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA

[3] Univ Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA

[4] Univ Colorado, Dept Ecol & Evolutionary Biol, Boulder, CO 80309 USA

[5] Univ Colorado, Howard Hughes Med Inst, Boulder, CO 80309 USA

来源：

BIOINFORMATICS | 2012年 / 28卷 / 03期

基金：

美国国家卫生研究院; 比尔及梅琳达.盖茨基金会;

关键词：

HUMAN MICROBIOME PROJECT;

D O I：

10.1093/bioinformatics/btr685

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

As microbial ecologists take advantage of high-throughput analytical techniques to describe microbial communities across everincreasing numbers of samples, the need for new analysis tools that reveal the intrinsic spatial patterns and structures of these populations is crucial. Here we present SitePainter, an interactive graphical tool that allows investigators to create or upload pictures of their study site, load diversity analyses data and display both diversity and taxonomy results in a spatial context. Features of SitePainter include: visualizing alpha-diversity, using taxonomic summaries; visualizing beta-diversity, using results from multidimensional scaling methods; and animating relationships among microbial taxa or pathways overtime. SitePainter thus increases the visual power and ability to explore spatially explicit studies. Availability: https://sourceforge. net/projects/sitepainter

引用

页码：436 / 438

页数：3

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