Osmolyte effects on protein stability and solubility: A balancing act between backbone and side-chains

被引:206
作者
Auton, Matthew [2 ]
Roesgen, Joerg [3 ]
Sinev, Mikhail [3 ]
Holthauzen, Luis Marcelo F. [1 ]
Bolen, D. Wayne [1 ]
机构
[1] Univ Texas Med Branch, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX USA
[2] Baylor Coll Med, Dept Med, Houston, TX 77030 USA
[3] Penn State Coll Med, Dept Biochem & Mol Biol, Hershey, PA USA
关键词
Osmolyte; Folding; Protein stability; m-Value; Solubility; Urea; AQUEOUS UREA SOLUTIONS; FOLDING IN-VITRO; ORGANIC OSMOLYTES; UNFOLDED PROTEINS; ALPHA-CHYMOTRYPSIN; ADENYLATE KINASE; DENATURED STATE; GLYCINE BETAINE; MODEL-COMPOUND; AMINO-ACIDS;
D O I
10.1016/j.bpc.2011.05.012
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
In adaptation biology the discovery of intracellular osmolyte molecules that in some cases reach molar levels, raises questions of how they influence protein thermodynamics. We've addressed such questions using the premise that from atomic coordinates, the transfer free energy of a native protein (Delta G(tr,N)) can be predicted by summing measured water-to-osmolyte transfer free energies of the protein's solvent exposed side chain and backbone component parts. Delta G(tr,D) is predicted using a self avoiding random coil model for the protein, and Delta G(tr,D) - Delta G(tr,N), predicts the m-value, a quantity that measures the osmolyte effect on the N=D transition. Using literature and newly measured m-values we show 1:1 correspondence between predicted and measured m-values covering a range of 12 kcal/mol/M in protein stability for 46 proteins and 9 different osmolytes. Osmolytes present a range of side chain and backbone effects on N and D solubility and protein stability key to their biological roles. (C) 2011 Elsevier B.V. All rights reserved.
引用
收藏
页码:90 / 99
页数:10
相关论文
共 61 条
[1]
Additive transfer free energies of the peptide backbone unit that are independent of the model compound and the choice of concentration scale [J].
Auton, M ;
Bolen, DW .
BIOCHEMISTRY, 2004, 43 (05) :1329-1342
[2]
Predicting the energetics of osmolyte-induced protein folding/unfolding [J].
Auton, M ;
Bolen, DW .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (42) :15065-15068
[3]
Application of the transfer model to understand how naturally occuring osmolytes affect protein stability [J].
Auton, Matthew ;
Bolen, D. Wayne .
OSMOSENSING AND OSMOSIGNALING, 2007, 428 :397-418
[4]
Anatomy of energetic changes accompanying urea-induced protein denaturation [J].
Auton, Matthew ;
Holthauzen, Luis Marcelo F. ;
Bolen, D. Wayne .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (39) :15317-15322
[5]
Structural thermodynamics of protein preferential solvation: Osmolyte solvation of proteins, aminoacids, and peptides [J].
Auton, Matthew ;
Bolen, D. Wayne ;
Rosgen, Jorg .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2008, 73 (04) :802-813
[6]
Forcing thermodynamically unfolded proteins to fold [J].
Baskakov, I ;
Bolen, DW .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1998, 273 (09) :4831-4834
[7]
The osmophobic effect: Natural selection of a thermodynamic force in protein folding [J].
Bolen, DW ;
Baskakov, IV .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 310 (05) :955-963
[8]
Effects of naturally occurring osmolytes on protein stability and solubility: issues important in protein crystallization [J].
Bolen, DW .
METHODS, 2004, 34 (03) :312-322
[9]
Urea-amide preferential interactions in water: Quantitative comparison of model compound data with biopolymer results using water accessible surface areas [J].
Cannon, Jonathan G. ;
Anderson, Charles F. ;
Record, M. Thomas, Jr. .
JOURNAL OF PHYSICAL CHEMISTRY B, 2007, 111 (32) :9675-9685
[10]
Cohn E. J., 1943, Proteins