Predicting the energetics of osmolyte-induced protein folding/unfolding

被引:370
作者
Auton, M [1 ]
Bolen, DW [1 ]
机构
[1] Univ Texas, Med Branch, Dept Human Biol Chem, Galveston, TX 77555 USA
关键词
group transfer free energies; m value; transfer model;
D O I
10.1073/pnas.0507053102
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
A primary thermodynamic goal in protein biochemistry is to attain predictive understanding of the detailed energetic changes that are responsible for folding/unfolding. Through use of recently determined free energies of side-chain and backbone transfer from water to osmolytes and Tanford's transfer model, we demonstrate that the long-sought goal of predicting solvent-dependent cooperative protein folding/unfolding free-energy changes (m values) can be achieved. Moreover, the approach permits dissection of the folding/unfolding free-energy changes into individual contributions from the peptide backbone and residue side chains.
引用
收藏
页码:15065 / 15068
页数:4
相关论文
共 30 条
  • [1] [Anonymous], PROTEINS AMINO ACIDS
  • [2] Additive transfer free energies of the peptide backbone unit that are independent of the model compound and the choice of concentration scale
    Auton, M
    Bolen, DW
    [J]. BIOCHEMISTRY, 2004, 43 (05) : 1329 - 1342
  • [3] Baldwin RL, 2005, PROTEIN FOLDING HANDBOOK, P127
  • [4] Forcing thermodynamically unfolded proteins to fold
    Baskakov, I
    Bolen, DW
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 1998, 273 (09) : 4831 - 4834
  • [5] The paradox between m values and ΔCp's for denaturation of ribonuclease T1 with disulfide bonds intact and broken
    Baskakov, IV
    Bolen, DW
    [J]. PROTEIN SCIENCE, 1999, 8 (06) : 1314 - 1319
  • [6] Monitoring the sizes of denatured ensembles of staphylococcal nuclease proteins:: Implications regarding m values, intermediates, and thermodynamics
    Baskakov, IV
    Bolen, DW
    [J]. BIOCHEMISTRY, 1998, 37 (51) : 18010 - 18017
  • [7] The osmophobic effect: Natural selection of a thermodynamic force in protein folding
    Bolen, DW
    Baskakov, IV
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2001, 310 (05) : 955 - 963
  • [8] Modeling unfolded states of proteins and peptides .2. Backbone solvent accessibility
    Creamer, TP
    Srinivasan, R
    Rose, GD
    [J]. BIOCHEMISTRY, 1997, 36 (10) : 2832 - 2835
  • [9] Modeling unfolded states of peptides and proteins
    Creamer, TP
    Srinivasan, R
    Rose, GD
    [J]. BIOCHEMISTRY, 1995, 34 (50) : 16245 - 16250
  • [10] DOMINANT FORCES IN PROTEIN FOLDING
    DILL, KA
    [J]. BIOCHEMISTRY, 1990, 29 (31) : 7133 - 7155