Saccharomyces cerevisiae SFP1:: at the crossroads of central metabolism and ribosome biogenesis

被引:37
作者
Cipollina, Chiara [2 ]
van den Brink, Joost [1 ]
Daran-Lapujade, Pascale [1 ,3 ]
Pronk, Jack T. [1 ,3 ]
Porro, Danilo [2 ]
de Winde, Johannes H. [1 ,3 ]
机构
[1] Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands
[2] Univ Milano Bicocca, Dipartimento Biotecnol & Biosci, I-20126 Milan, Italy
[3] Kluyver Ctr Genom Ind Fermentat, NL-2628 BC Delft, Netherlands
来源
MICROBIOLOGY-SGM | 2008年 / 154卷
关键词
D O I
10.1099/mic.0.2008/017392-0
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Saccharomyces cerevisiae SFP1 is required for nutrient-depen dent regulation of ribosome biogenesis and cell size. A mutant deleted for SFP1 shows specific traits, including a slow growth phenotype, especially when growing on glucose. We recently analysed the physiology of an sfp1 Delta mutant and its isogenic reference strain in chemostat cultures. This approach was successful in revealing the effects of nutrients on the activity of Sfp1 independent of growth rate-related feedback. In the present work we exposed carbon-limited cultures of an sfp1 Delta mutant and its reference strain to sudden glucose excess. This allowed us to study the effect of SFP1 deletion on cell physiology when the cells are forced to exploit their maximum growth potential; this is similar to what happens in shake-flask cultures but with no bias due to growth rate differences. We show that nutrients differentiallly affect the role of Sfp1 in cell-size modulation and in transcriptional control. Furthermore, we report that while Sfp1 is necessary for the efficient glucose-dependent regulation of ribosome biogenesis genes, it is not required for the proper induction of ribosomal protein genes in response to glucose excess. Finally, our data suggest a role for Sfp1 in the regulation of glycolysis, further underlining its involvement in the network that links ribosome biogenesis and cell metabolism.
引用
收藏
页码:1686 / 1699
页数:14
相关论文
共 60 条
[21]   Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae [J].
Hughes, JD ;
Estep, PW ;
Tavazoie, S ;
Church, GM .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 296 (05) :1205-1214
[22]   Prolonged selection in aerobic, glucose-limited chemostat cultures of Saccharomyces cerevisiae causes a partial loss of glycolytic capacity [J].
Jansen, MLA ;
Diderich, JA ;
Mashego, M ;
Hassane, A ;
de Winde, JH ;
Daran-Lapujade, P ;
Pronk, JT .
MICROBIOLOGY-SGM, 2005, 151 :1657-1669
[23]   Feasting, fasting and fermenting - glucose sensing in yeast and other cells [J].
Johnston, M .
TRENDS IN GENETICS, 1999, 15 (01) :29-33
[24]   A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size [J].
Jorgensen, P ;
Rupes, I ;
Sharom, JR ;
Schneper, L ;
Broach, JR ;
Tyers, M .
GENES & DEVELOPMENT, 2004, 18 (20) :2491-2505
[25]   Systematic identification of pathways that couple cell growth and division in yeast [J].
Jorgensen, P ;
Nishikawa, JL ;
Breitkreutz, BJ ;
Tyers, M .
SCIENCE, 2002, 297 (5580) :395-400
[26]   PROTEIN-KINASE-A MEDIATES GROWTH-REGULATED EXPRESSION OF YEAST RIBOSOMAL-PROTEIN GENES BY MODULATING RAP1 TRANSCRIPTIONAL ACTIVITY [J].
KLEIN, C ;
STRUHL, K .
MOLECULAR AND CELLULAR BIOLOGY, 1994, 14 (03) :1920-1928
[27]  
KNIJNENBURG TA, 2008, IJBRA, V4, P3
[28]   Exploiting combinatorial cultivation conditions to infer transcriptional regulation [J].
Knijnenburg, Theo A. ;
de Winde, Johannes H. ;
Daran, Jean-Marc ;
Daran-Lapujade, Pascale ;
Pronk, Jack T. ;
Reinders, Marcel J. T. ;
Wessels, Lodewyk F. A. .
BMC GENOMICS, 2007, 8 (1)
[29]   When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation [J].
Kresnowati, M. T. A. P. ;
van Winden, W. A. ;
Almering, M. J. H. ;
ten Pierick, A. ;
Ras, C. ;
Knijnenburg, T. A. ;
Daran-Lapujade, P. ;
Pronk, J. T. ;
Heijnen, J. J. ;
Daran, J. M. .
MOLECULAR SYSTEMS BIOLOGY, 2006, 2 (1)
[30]   The transcriptional activity of RNA polymerase I is a key determinant for the level of all ribosome components [J].
Laferte, Arnaud ;
Favry, Emmanuel ;
Sentenac, Andre ;
Riva, Michel ;
Carles, Christophe ;
Chedin, Stephane .
GENES & DEVELOPMENT, 2006, 20 (15) :2030-2040