Organizational and mutational analysis of a complete FR-008/candicidin gene cluster encoding a structurally related polyene complex

被引:128
作者
Chen, S
Huang, X
Zhou, XF
Bai, LQ
He, J
Jeong, KJ
Lee, SY [1 ]
Deng, ZX
机构
[1] Shanghai Jiao Tong Univ, BioX Life Sci Res Ctr, Shanghai 200030, Peoples R China
[2] Shanghai Jiao Tong Univ, Sch Life Sci & Biotechnol, Shanghai 200030, Peoples R China
[3] Korea Adv Inst Sci & Technol, Dept Chem & Biomol Engn, Taejon 305701, South Korea
[4] Huazhong Agr Univ, Sch Life Sci & Technol, Wuhan 430070, Peoples R China
来源
CHEMISTRY & BIOLOGY | 2003年 / 10卷 / 11期
基金
中国国家自然科学基金;
关键词
D O I
10.1016/j.chembiol.2003.10.007
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The complete gene cluster for biosynthesis of a polyene complex, FR-008, spans 137.2 kb of the genome of Streptomyces sp. FR-008 consisting of six genes for a modular PKS and 15 additional genes. The extensive similarity to the partially characterized candicidin gene cluster in Streptomyces griseus IMRU3570, especially for genes involved in mycosamine biosynthesis, prompted us to compare the compounds produced by Streptomyces sp. FR-008 and Streptomyces griseus IMRU3570, and we found that FR-008 and candicidin complex are identical. A model for biosynthesis of a set of four structurally related FR-008/candicidin compounds was proposed. Deletion of the putative regulatory genes abolished antibiotic production, while disruption of putative glycosyltransferase and GDP-ketosugar aminotransferase functionalities led to the productions of a set of nonmycosaminated aglycones and a novel polyene complex with attachment of altered sugar moiety, respectively.
引用
收藏
页码:1065 / 1076
页数:12
相关论文
共 46 条
[31]   A model of structure and catalysis for ketoreductase domains in modular polyketide synthases [J].
Reid, R ;
Piagentini, M ;
Rodriguez, E ;
Ashley, G ;
Viswanathan, N ;
Carney, J ;
Santi, DV ;
Hutchinson, CR ;
McDaniel, R .
BIOCHEMISTRY, 2003, 42 (01) :72-79
[32]  
Sambrook J., 1989, MOL CLONING
[33]   Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements [J].
Schäffer, AA ;
Aravind, L ;
Madden, TL ;
Shavirin, S ;
Spouge, JL ;
Wolf, YI ;
Koonin, EV ;
Altschul, SF .
NUCLEIC ACIDS RESEARCH, 2001, 29 (14) :2994-3005
[34]   THE BIOSYNTHETIC GENE-CLUSTER FOR THE POLYKETIDE IMMUNOSUPPRESSANT RAPAMYCIN [J].
SCHWECKE, T ;
APARICIO, JF ;
MOLNAR, I ;
KONIG, A ;
KHAW, LE ;
HAYDOCK, SF ;
OLIYNYK, M ;
CAFFREY, P ;
CORTES, J ;
LESTER, JB ;
BOHM, GA ;
STAUNTON, J ;
LEADLAY, PF .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (17) :7839-7843
[35]   LAMBDA-ZAP - A BACTERIOPHAGE LAMBDA-EXPRESSION VECTOR WITH INVIVO EXCISION PROPERTIES [J].
SHORT, JM ;
FERNANDEZ, JM ;
SORGE, JA ;
HUSE, WD .
NUCLEIC ACIDS RESEARCH, 1988, 16 (15) :7583-7600
[36]   A complete gene cluster from Streptomyces nanchangensis NS3226 encoding biosynthesis of the polyether ionophore nanchangmycin [J].
Sun, YH ;
Zhou, XF ;
Dong, H ;
Tu, GQ ;
Wang, M ;
Wang, BF ;
Deng, ZX .
CHEMISTRY & BIOLOGY, 2003, 10 (05) :431-441
[37]   'Streptomyces nanchangensis', a producer of the insecticidal polyether antibiotic nanchangmycin and the antiparasitic macrolide meilingmycin, contains multiple polyketide gene clusters [J].
Sun, YH ;
Zhou, XF ;
Liu, J ;
Bao, K ;
Zhang, GM ;
Tu, GQ ;
Kieser, T ;
Deng, ZX .
MICROBIOLOGY-SGM, 2002, 148 :361-371
[38]   Elucidating the mechanism of chain termination switching in the picromycin/methymycin polyketide synthase [J].
Tang, L ;
Fu, H ;
Betlach, MC ;
McDaniel, R .
CHEMISTRY & BIOLOGY, 1999, 6 (08) :553-558
[39]   Characterization of the enzymatic domains in the modular polyketide synthase involved in rifamycin B biosynthesis by Amycolatopsis mediterranei [J].
Tang, L ;
Yoon, YJ ;
Choi, CY ;
Hutchinson, CR .
GENE, 1998, 216 (02) :255-265
[40]   CLUSTAL-W - IMPROVING THE SENSITIVITY OF PROGRESSIVE MULTIPLE SEQUENCE ALIGNMENT THROUGH SEQUENCE WEIGHTING, POSITION-SPECIFIC GAP PENALTIES AND WEIGHT MATRIX CHOICE [J].
THOMPSON, JD ;
HIGGINS, DG ;
GIBSON, TJ .
NUCLEIC ACIDS RESEARCH, 1994, 22 (22) :4673-4680