Disclosing pathogenic genetic variants to research participants: Quantifying an emerging ethical responsibility

被引:69
作者
Cassa, Christopher A. [1 ,2 ]
Savage, Sarah K.
Taylor, Patrick L. [3 ]
Green, Robert C. [2 ,4 ,5 ]
McGuire, Amy L. [6 ]
Mandl, Kenneth D. [1 ,2 ,7 ]
机构
[1] Childrens Hosp Boston, Childrens Hosp Informat Program, Boston, MA 02115 USA
[2] Harvard Univ, Harvard Med Sch, Boston, MA 02115 USA
[3] Harvard Univ, Sch Law, Petrie Flom Ctr, Cambridge, MA 02138 USA
[4] Harvard Univ, Sch Med, Brigham & Womens Hosp, Div Genet, Boston, MA 02115 USA
[5] Harvard Univ, Sch Med, Partners Healthcare Ctr Personalized Genet Med, Boston, MA 02115 USA
[6] Baylor Coll Med, Ctr Med Eth & Hlth Policy, Houston, TX 77030 USA
[7] Harvard Univ, Sch Med, Ctr Biomed Informat, Boston, MA 02115 USA
关键词
INCIDENTAL FINDINGS; PERSONALIZED MEDICINE; GENOMIC APPLICATIONS; INFORMED-CONSENT; WORKING GROUP; PREVENTION; BIOBANKING; MRI;
D O I
10.1101/gr.127845.111
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
There is an emerging consensus that when investigators obtain genomic data from research participants, they may incur an ethical responsibility to inform at-risk individuals about clinically significant variants discovered during the course of their research. With whole-exome sequencing becoming commonplace and the falling costs of full-genome sequencing, there will be an increasingly large number of variants identified in research participants that may be of sufficient clinical relevance to share. An explicit approach to triaging and communicating these results has yet to be developed, and even the magnitude of the task is uncertain. To develop an estimate of the number of variants that might qualify for disclosure, we apply recently published recommendations for the return of results to a defined and representative set of variants and then extrapolate these estimates to genome scale. We find that the total number of variants meeting the threshold for recommended disclosure ranges from 3955-12,579 (3.79%-12.06%, 95% Cl) in the most conservative estimate to 6998-17,189 (6.69%-16.48%, 95% Cl) in an estimate including variants with variable disease expressivity. Additionally, if the growth rate from the previous 4 yr continues, we estimate that the total number of disease-associated variants will grow 37% over the next 4 yr.
引用
收藏
页码:421 / 428
页数:8
相关论文
共 40 条
[1]   McKusick's Online Mendelian Inheritance in Man (OMIM®) [J].
Amberger, Joanna ;
Bocchini, Carol A. ;
Scott, Alan F. ;
Hamosh, Ada .
NUCLEIC ACIDS RESEARCH, 2009, 37 :D793-D796
[2]  
[Anonymous], 2002, Med Ref Serv Q, V21, P47, DOI 10.1300/J115v21n02_05
[3]   Clinical assessment incorporating a personal genome [J].
Ashley, Euan A. ;
Butte, Atul J. ;
Wheeler, Matthew T. ;
Chen, Rong ;
Klein, Teri E. ;
Dewey, Frederick E. ;
Dudley, Joel T. ;
Ormond, Kelly E. ;
Pavlovic, Aleksandra ;
Morgan, Alexander A. ;
Pushkarev, Dmitry ;
Neff, Norma F. ;
Hudgins, Louanne ;
Gong, Li ;
Hodges, Laura M. ;
Berlin, Dorit S. ;
Thorn, Caroline F. ;
Sangkuhl, Katrin ;
Hebert, Joan M. ;
Woon, Mark ;
Sagreiya, Hersh ;
Whaley, Ryan ;
Knowles, Joshua W. ;
Chou, Michael F. ;
Thakuria, Joseph V. ;
Rosenbaum, Abraham M. ;
Zaranek, Alexander Wait ;
Church, George M. ;
Greely, Henry T. ;
Quake, Stephen R. ;
Altman, Russ B. .
LANCET, 2010, 375 (9725) :1525-1535
[4]   Offering Individual Genetic Research Results: Context Matters [J].
Beskow, Laura M. ;
Burke, Wylie .
SCIENCE TRANSLATIONAL MEDICINE, 2010, 2 (38)
[5]   Informed consent for population-based research involving genetics [J].
Beskow, LM ;
Burke, W ;
Merz, JF ;
Barr, PA ;
Terry, S ;
Penchaszadeh, VB ;
Gostin, LO ;
Gwinn, M ;
Khoury, MJ .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2001, 286 (18) :2315-2321
[6]   Biobanking: freezer burn [J].
Blow, Nathan .
NATURE METHODS, 2009, 6 (02) :173-177
[7]   Interval estimation for a binomial proportion - Comment - Rejoinder [J].
Brown, LD ;
Cai, TT ;
DasGupta, A ;
Agresti, A ;
Coull, BA ;
Casella, G ;
Corcoran, C ;
Mehta, C ;
Ghosh, M ;
Santner, TJ ;
Brown, LD ;
Cai, TT ;
DasGupta, A .
STATISTICAL SCIENCE, 2001, 16 (02) :101-133
[8]   Research ethics recommendations for whole-genome research: Consensus statement [J].
Caulfield, Timothy ;
McGuire, Amy L. ;
Cho, Mildred ;
Buchanan, Janet A. ;
Burgess, Michael M. ;
Danilczyk, Ursula ;
Diaz, Christina M. ;
Fryer-Edwards, Kelly ;
Green, Shane K. ;
Hodosh, Marc A. ;
Juengst, Eric T. ;
Kaye, Jane ;
Kedes, Laurence ;
Knoppers, Bartha Maria ;
Lemmens, Trudo ;
Meslin, Eric M. ;
Murphy, Juli ;
Nussbaum, Robert L. ;
Otlowski, Margaret ;
Pullman, Daryl ;
Ray, Peter N. ;
Sugarman, Jeremy ;
Timmons, Michael .
PLOS BIOLOGY, 2008, 6 (03) :430-435
[9]   Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays [J].
Drmanac, Radoje ;
Sparks, Andrew B. ;
Callow, Matthew J. ;
Halpern, Aaron L. ;
Burns, Norman L. ;
Kermani, Bahram G. ;
Carnevali, Paolo ;
Nazarenko, Igor ;
Nilsen, Geoffrey B. ;
Yeung, George ;
Dahl, Fredrik ;
Fernandez, Andres ;
Staker, Bryan ;
Pant, Krishna P. ;
Baccash, Jonathan ;
Borcherding, Adam P. ;
Brownley, Anushka ;
Cedeno, Ryan ;
Chen, Linsu ;
Chernikoff, Dan ;
Cheung, Alex ;
Chirita, Razvan ;
Curson, Benjamin ;
Ebert, Jessica C. ;
Hacker, Coleen R. ;
Hartlage, Robert ;
Hauser, Brian ;
Huang, Steve ;
Jiang, Yuan ;
Karpinchyk, Vitali ;
Koenig, Mark ;
Kong, Calvin ;
Landers, Tom ;
Le, Catherine ;
Liu, Jia ;
McBride, Celeste E. ;
Morenzoni, Matt ;
Morey, Robert E. ;
Mutch, Karl ;
Perazich, Helena ;
Perry, Kimberly ;
Peters, Brock A. ;
Peterson, Joe ;
Pethiyagoda, Charit L. ;
Pothuraju, Kaliprasad ;
Richter, Claudia ;
Rosenbaum, Abraham M. ;
Roy, Shaunak ;
Shafto, Jay ;
Sharanhovich, Uladzislau .
SCIENCE, 2010, 327 (5961) :78-81
[10]   Ethical and Practical Guidelines for Reporting Genetic Research Results to Study Participants Updated Guidelines From a National Heart, Lung, and Blood Institute Working Group [J].
Fabsitz, Richard R. ;
McGuire, Amy ;
Sharp, Richard R. ;
Puggal, Mona ;
Beskow, Laura M. ;
Biesecker, Leslie G. ;
Bookman, Ebony ;
Burke, Wylie ;
Burchard, Esteban Gonzalez ;
Church, George ;
Clayton, Ellen Wright ;
Eckfeldt, John H. ;
Fernandez, Conrad V. ;
Fisher, Rebecca ;
Fullerton, Stephanie M. ;
Gabriel, Stacey ;
Gachupin, Francine ;
James, Cynthia ;
Jarvik, Gail P. ;
Kittles, Rick ;
Leib, Jennifer R. ;
O'Donnell, Christopher ;
O'Rourke, P. Pearl ;
Rodriguez, Laura Lyman ;
Schully, Sheri D. ;
Shuldiner, Alan R. ;
Sze, Rebecca K. F. ;
Thakuria, Joseph V. ;
Wolf, Susan M. ;
Burke, Gregory L. .
CIRCULATION-CARDIOVASCULAR GENETICS, 2010, 3 (06) :574-580